YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50119252, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50119252, gi|....

Description	E-value	Query Range	Subject Range
gi\|119864307, gi... - gi\|119945703\|ref\|YP_943383.1\| heavy metal translocating P-type ATPase [Psychromonas ingrahamii 37], ...	157.0	[0..2]	[185..571]
gi\|76573479 - gi\|76573479\|dbj\|BAE44563.1\| hypothetical protein [Candida albicans] gi\|68471207, gi\|... - gi\|77022444\|ref\|XP_888666.1\| hypothetical protein CaO19_7089 [Candida albicans SC5314], gi\|68471207\|...	154.0	[0..3]	[187..490]
gi\|7543927 - gi\|7543927\|emb\|CAB87245.1\| calcium/mangenease P-type ATPase PMR1 [Candida albicans]	154.0	[0..3]	[187..490]
gi\|76151977 - gi\|76151977\|gb\|ABA39707.1\| TcrA [Enterococcus faecium]	154.0	[0..3]	[185..566]
gi\|47214278 - gi\|47214278\|emb\|CAG01335.1\| unnamed protein product [Tetraodon nigroviridis]	154.0	[0..22]	[184..1458]
gi\|85721432, gi\|... - gi\|85858341\|ref\|YP_460543.1\| cation transport ATPase [Syntrophus aciditrophicus SB], gi\|85721432\|gb\|...	152.0	[0..2]	[185..571]
gi\|57228670, gi\|... - gi\|58270512\|ref\|XP_572412.1\| calcium-transporting ATPase [Cryptococcus neoformans var. neoformans JE... gi\|50254984, gi\|... - gi\|50254984\|gb\|EAL17724.1\| hypothetical protein CNBL2380 [Cryptococcus neoformans var. neoformans B-...	152.0	[0..8]	[187..534]
gi\|14275754 - gi\|14275754\|emb\|CAC40033.1\| P-type ATPase [Hordeum vulgare]	152.0	[0..2]	[187..174]
gi\|77973408, gi\|... - gi\|77973408\|ref\|ZP_00828956.1\| COG1778: Low specificity phosphatase (HAD superfamily) [Yersinia fred...	151.0	[0..6]	[188..5]
gi\|114776656, gi... - gi\|114776656\|ref\|ZP_01451699.1\| Heavy metal translocating P-type ATPase [Mariprofundus ferrooxydans ...	151.0	[0..29]	[185..631]

Back

Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETRAQTDT CYGPVDQQVL DKAREVRLLI CDVDGVMSDG LIYMGNHGEE LKAFNVRDGY  60
   61 GIRCLLTSGI EVAIITGRSA KLLEDRCKTL GINHLYQGQS DKVLAFNDLL DKLSVTANQV 120
  121 AYIGDDMIDW PVMAQVGLSV AVTDAHPLLL PRADYVTRIA GGRGAVRELC DLILFSQDKL 180
  181 EHAKGLSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.30103
Match:	1j8dA
Description:	Probable phosphatase YrbI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: