YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49609511, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49609511, gi|....

Description	E-value	Query Range	Subject Range
DSBA_PECCC - Thiol:disulfide interchange protein DsbA OS=Pectobacterium carotovorum subsp. carotovorum GN=dsbA PE... gi\|227327115 - gi\|227327115\|ref\|ZP_03831139.1\| periplasmic protein disulfide isomerase I [Pectobacterium carotovoru... DSBA_ERWCA - (Q9RB10) Thiol:disulfide interchange protein dsbA precursor	187.0	[0..1]	[207..1]
gi\|5712693 - gi\|5712693\|gb\|AAD47608.1\|AF146613_1 DsbA precursor [Pectobacterium carotovorum subsp. atrosepticum]	185.0	[0..1]	[207..1]
gi\|77972096 - gi\|77972096\|ref\|ZP_00827675.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia frederi...	184.0	[0..1]	[207..1]
gi\|77960493, gi\|... - gi\|77960493\|ref\|ZP_00824362.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia mollare...	183.0	[0..1]	[207..1]
gi\|238726144, gi... - gi\|77976787\|ref\|ZP_00832258.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia interme...	182.0	[0..1]	[207..1]
gi\|194448785, gi... - gi\|194448785\|ref\|YP_002048001.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subs... gi\|194403417, gi... - gi\|194444754\|ref\|YP_002043220.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp... gi\|194710473, gi... - gi\|194734971\|ref\|YP_002116918.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp... gi\|194456189, gi... - gi\|194469825\|ref\|ZP_03075809.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp.... gi\|205348148, gi... - gi\|205348148\|gb\|EDZ34779.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp. ent... gi\|205336835, gi... - gi\|205336835\|gb\|EDZ23599.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp. ent... gi\|168821673, gi... - gi\|205341859\|gb\|EDZ28623.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp. ent... gi\|195630230, gi... - gi\|195630230\|gb\|EDX48870.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp. ent... gi\|167995297, gi... - gi\|205327011\|gb\|EDZ13775.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp. ent... gi\|205323773, gi... - gi\|205323773\|gb\|EDZ11612.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp. ent... gi\|168237611, gi... - gi\|197289324\|gb\|EDY28689.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp. ent... gi\|205332877, gi... - gi\|205332877\|gb\|EDZ19641.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp. ent... gi\|161366482, gi... - gi\|161617118\|ref\|YP_001591083.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subs... gi\|204320645, gi... - gi\|204930241\|ref\|ZP_03221218.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp.... gi\|199605673, gi... - gi\|200388575\|ref\|ZP_03215187.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp.... DSBA_SALTY - Thiol:disulfide interchange protein DsbA OS=Salmonella typhimurium GN=dsbA PE=1 SV=1 gi\|207859191, gi... - gi\|207859191\|ref\|YP_002245842.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subs... DSBA_SALEN - Thiol:disulfide interchange protein DsbA OS=Salmonella enteritidis GN=dsbA PE=3 SV=1 gi\|205354417, gi... - gi\|205354417\|ref\|YP_002228218.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subs... gi\|197265468, gi... - gi\|197265468\|ref\|ZP_03165542.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp.... gi\|197213876, gi... - gi\|197250173\|ref\|YP_002148917.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp... gi\|197940344, gi... - gi\|198245828\|ref\|YP_002217919.1\| thiol:disulfide interchange protein DsbA [Salmonella enterica subsp... gi\|197096251, gi... - gi\|197364774\|ref\|YP_002144411.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subs... gi\|62130093, gi\|... - gi\|62182460\|ref\|YP_218877.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp. e... gi\|56415844, gi\|... - gi\|56415844\|ref\|YP_152919.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp. e... lcl\|NC_016856.1_... - [gene=dsbA] [protein=protein disulfide isomerase I] [protein_id=YP_005240260.1] [location=4217783..4... DSBA_SALTY - Thiol:disulfide interchange protein DsbA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700... DSBA_SALEN - Thiol:disulfide interchange protein dsbA OS=Salmonella enteritidis GN=dsbA PE=3 SV=1 DSBA_SALTY - Thiol:disulfide interchange protein dsbA OS=Salmonella typhimurium GN=dsbA PE=3 SV=1	182.0	[0..1]	[207..1]
gi\|213422102 - gi\|213422102\|ref\|ZP_03355168.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp... gi\|213425458 - gi\|213425458\|ref\|ZP_03358208.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp... gi\|213580146 - gi\|213580146\|ref\|ZP_03361972.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp... gi\|213612755 - gi\|213612755\|ref\|ZP_03370581.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp... gi\|213163758 - gi\|213163758\|ref\|ZP_03349468.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp... DSBA_SALTI - Thiol:disulfide interchange protein DsbA OS=Salmonella typhi GN=dsbA PE=3 SV=1 gi\|29143922, gi\|... - gi\|29143922\|ref\|NP_807264.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp. e... gi\|213650656 - gi\|213650656\|ref\|ZP_03380709.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp... DSBA_SALTI - Thiol:disulfide interchange protein dsbA OS=Salmonella typhi GN=dsbA PE=3 SV=1 gi\|213865446 - gi\|213865446\|ref\|ZP_03387565.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp... gi\|16762434 - gi\|16762434\|ref\|NP_458051.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp. e... gi\|214002909 - gi\|214002909\|ref\|ZP_03413644.1\| periplasmic protein disulfide isomerase I [Salmonella enterica subsp...	182.0	[0..1]	[207..1]
gi\|165940210, gi... - gi\|89102782\|ref\|ZP_01175392.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pestis ... gi\|108809517, gi... - gi\|108809517\|ref\|YP_653433.1\| periplasmic protein disulfide isomerase I [Yersinia pestis Antiqua], g... gi\|45434737, gi\|... - gi\|45439882\|ref\|NP_991421.1\| periplasmic protein disulfide isomerase I [Yersinia pestis biovar Micro... gi\|22127683, gi\|... - gi\|22127683\|ref\|NP_671106.1\| periplasmic protein disulfide isomerase I [Yersinia pestis KIM], gi\|219... gi\|115345848, gi... - gi\|218927237\|ref\|YP_002345112.1\| periplasmic protein disulfide isomerase I [Yersinia pestis CO92], g... gi\|51594375, gi\|... - gi\|51594375\|ref\|YP_068566.1\| periplasmic protein disulfide isomerase I [Yersinia pseudotuberculosis ... gi\|229682368, gi... - gi\|229900587\|ref\|ZP_04515712.1\| periplasmic protein disulfide isomerase I [Yersinia pestis Nepal516]... gi\|229836125, gi... - gi\|229836125\|ref\|ZP_04456293.1\| periplasmic protein disulfide isomerase I [Yersinia pestis Pestoides... gi\|229696229, gi... - gi\|229839863\|ref\|ZP_04460022.1\| periplasmic protein disulfide isomerase I [Yersinia pestis biovar Or... gi\|229690254, gi... - gi\|229841944\|ref\|ZP_04462099.1\| periplasmic protein disulfide isomerase I [Yersinia pestis biovar Or... Q66GG5\|Q66GG5_YERPS - Secreted thiol:disulfide interchange protein DsbA precursor - Yersinia pseudotuberculosis gi\|162351663, gi... - gi\|77633414\|ref\|ZP_00795546.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pestis ... gi\|153947881, gi... - gi\|77630911\|ref\|ZP_00793497.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pseudot... gi\|166011450, gi... - gi\|166011450\|ref\|ZP_02232348.1\| thiol:disulfide interchange protein DsbA [Yersinia pestis biovar Ant... gi\|165922040, gi... - gi\|165926180\|ref\|ZP_02222012.1\| thiol:disulfide interchange protein DsbA [Yersinia pestis biovar Ori... gi\|167402132, gi... - gi\|167402132\|ref\|ZP_02307609.1\| thiol:disulfide interchange protein DsbA [Yersinia pestis biovar Ant... gi\|166213669, gi... - gi\|166213669\|ref\|ZP_02239704.1\| thiol:disulfide interchange protein DsbA [Yersinia pestis biovar Ant... gi\|150260920, gi... - gi\|150260920\|ref\|ZP_01917648.1\| secreted thiol:disulfide interchange protein DsbA [Yersinia pestis C... gi\|145212823, gi... - gi\|145601127\|ref\|YP_001165203.1\| periplasmic protein disulfide isomerase I [Yersinia pestis Pestoide... DSBA_YERPE - Thiol:disulfide interchange protein DsbA OS=Yersinia pestis GN=dsbA PE=3 SV=1 gi\|167053961, gi... - gi\|167427034\|ref\|ZP_02318787.1\| thiol:disulfide interchange protein DsbA [Yersinia pestis biovar Med... gi\|166962840, gi... - gi\|167418846\|ref\|ZP_02310599.1\| thiol:disulfide interchange protein DsbA [Yersinia pestis biovar Ori... gi\|169752937, gi... - gi\|170026403\|ref\|YP_001722908.1\| periplasmic protein disulfide isomerase I [Yersinia pseudotuberculo... gi\|167470383 - gi\|167470383\|ref\|ZP_02335087.1\| thiol:disulfide interchange protein DsbA [Yersinia pestis FV-1] gi\|186696388, gi... - gi\|186893362\|ref\|YP_001870474.1\| periplasmic protein disulfide isomerase I [Yersinia pseudotuberculo...	182.0	[0..1]	[207..1]
gi\|2558846 - gi\|2558846\|gb\|AAB81592.1\| disulfide oxidoreductase [Salmonella typhimurium] gi\|2558846\|gb\|AA... - disulfide oxidoreductase [Salmonella typhimurium]	182.0	[0..1]	[207..1]
gi\|238713474, gi... - gi\|77956894\|ref\|ZP_00820968.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia bercovi...	181.0	[0..1]	[207..1]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLWLALIG VVLAFSASAA EFSDGKQYVE LDKPATQEPQ VLEFFSFYCP HCYQFEQVYH  60
   61 VPDAVKKALP EGTKMTRYHV DFLGPLGKNL TQAWAVAMAL GVEDKITPLM FDAVQKTQTV 120
  121 QKPEDIRAVF VKAGVSAEEF DGALNSFVVK SLVAQQEKAA ADLQLRGVPA MFVNGKYMIK 180
  181 NDGLDTSSMD GYVKQYADVV KFLITKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1a23A
Description:	SOLUTION NMR STRUCTURE OF REDUCED DSBA FROM ESCHERICHIA COLI, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein disulfide isomerase activity	1.48801287843472	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing S-S bonds	1.48801287843472	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting keto- and enol-groups	1.37876060576659	bayes_pls_golite062009
catalytic activity	1.04263226837398	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	0.25957505753521	bayes_pls_golite062009
isomerase activity	0.24662332270942	bayes_pls_golite062009
disulfide oxidoreductase activity	0.22354310938224	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: