YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259005, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	203 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259005, gi|....

Description	E-value	Query Range	Subject Range
SODM_GEOSE - Superoxide dismutase [Mn] OS=Geobacillus stearothermophilus GN=sodA PE=1 SV=2	6.0E-88	[3..203]	[2..202]
gi\|229330794, gi... - gi\|229498423\|ref\|ZP_04392119.1\| Superoxide dismutase [Geobacillus sp. Y412MC52], gi\|229330794\|gb\|EEN... gi\|220706675, gi... - gi\|221089386\|ref\|ZP_03558905.1\| Superoxide dismutase [Geobacillus sp. Y412MC61], gi\|220706675\|gb\|EED... gi\|56420992, gi\|... - gi\|56420992\|ref\|YP_148310.1\| manganese superoxide dismutase [Geobacillus kaustophilus HTA426], gi\|56... gi\|7578509 - gi\|7578509\|gb\|AAF64074.1\|AF147780_1 superoxide dismutase [Geobacillus thermoleovorans] SODM_BACCA - Superoxide dismutase [Mn] OS=Bacillus caldotenax GN=sodA PE=3 SV=2	1.0E-87	[3..203]	[2..202]
gi\|227177082, gi... - gi\|227553829\|ref\|ZP_03983878.1\| Mn superoxide dismutase [Enterococcus faecalis HH22], gi\|227177082\|g... SODM_ENTFA - Superoxide dismutase [Fe] OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=sodA PE=3 SV=1 SODM_ENTFA - Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1	4.0E-87	[4..203]	[3..202]
gi\|73535547, gi\|... - gi\|73535547\|pdb\|1XUQ\|B Chain B, Crystal Structure Of Soda-1 (Ba4499) From Bacillus Anthracis At 1.8a...	6.0E-87	[1..203]	[10..212]
gi\|89201793, gi\|... - gi\|89201793\|ref\|ZP_01180528.1\| Superoxide dismutase [Bacillus cereus subsp. cytotoxis NVH 391-98], g...	7.0E-87	[1..203]	[1..203]
gi\|51974693, gi\|... - gi\|52141224\|ref\|YP_085605.1\| superoxide dismutase, Mn [Bacillus cereus E33L], gi\|51974693\|gb\|AAU1624...	1.0E-86	[1..203]	[1..203]
gi\|7798571 - gi\|7798571\|dbj\|BAA95631.1\| superoxide dismutase [Geobacillus thermoleovorans]	2.0E-86	[3..203]	[2..202]
gi\|3320377 - gi\|3320377\|gb\|AAC26483.1\| manganese superoxide dismutase [Vibrio alginolyticus]	2.0E-86	[4..202]	[3..201]
SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... SODM_BACHD - Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1	4.0E-86	[1..203]	[1..202]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHELPNLP YAYDALEPHF DKETMNIHHT KHHNTYITNL NAALEGHAEL ADKSVEELVA  60
   61 NLNEVPEAIR TAVRNNGGGH ANHTFFWTIL SPNGGGQPVG ELATAIEAKF GSFDAFKEEF 120
  121 AKAGATRFGS GWAWLVVNNG ELEVTSTPNQ DSPLTEGKTP VIGLDVWEHA YYLNYQNRRP 180
  181 DYIGAFWNVV DWNAAEKRYQ EAK

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Detection Method:	PSI-BLAST
Confidence:	88.39794
Match:	1xuqA
Description:	Crystal Structure of SodA-1 (BA4499) from Bacillus anthracis at 1.8A Resolution.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits