YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262093, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262093, gi|....

Description	E-value	Query Range	Subject Range
gi\|51976829, gi\|... - gi\|52143360\|ref\|YP_083468.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L], gi\|51976829...	3.0E-82	[1..246]	[1..246]
gi\|228587174, gi... - gi\|229196320\|ref\|ZP_04323068.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus... gi\|42781207, gi\|... - gi\|42781207\|ref\|NP_978454.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATC...	1.0E-81	[1..246]	[1..246]
gi\|47566836, gi\|... - gi\|47566836\|ref\|ZP_00237554.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241], gi\|47556...	2.0E-81	[1..246]	[1..246]
gi\|163939895, gi... - gi\|89208754\|ref\|ZP_01187243.1\| Peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysins [Bacill... gi\|228650512, gi... - gi\|229132930\|ref\|ZP_04261773.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus...	1.0E-80	[1..246]	[1..246]
gi\|228725476, gi... - gi\|229043851\|ref\|ZP_04191548.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus... gi\|218160994, gi... - gi\|218233037\|ref\|YP_002366776.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus... gi\|30020189, gi\|... - gi\|30020189\|ref\|NP_831820.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579], gi\|29... gi\|229127491, gi... - gi\|229127491\|ref\|ZP_04256483.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus...	2.0E-80	[1..246]	[1..246]
gi\|75764587, gi\|... - gi\|75764587\|ref\|ZP_00744040.1\| D-alanyl-D-alanine metallocarboxypeptidase [Bacillus thuringiensis se... gi\|218544589, gi... - gi\|218897061\|ref\|YP_002445472.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus... gi\|228794623, gi... - gi\|228965079\|ref\|ZP_04126176.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus... gi\|228858938, gi... - gi\|228900680\|ref\|ZP_04064899.1\| Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin [Bacillus...	3.0E-72	[1..246]	[1..246]
gi\|170708364, gi... - gi\|170708364\|ref\|ZP_02898808.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|170667783, gi... - gi\|170688277\|ref\|ZP_02879487.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|190566954, gi... - gi\|190566954\|ref\|ZP_03019870.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|177653146, gi... - gi\|177653146\|ref\|ZP_02935433.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|196034365, gi... - gi\|196034365\|ref\|ZP_03101774.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ... gi\|164712794, gi... - gi\|165871497\|ref\|ZP_02216144.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|167510370, gi... - gi\|167641663\|ref\|ZP_02399908.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|167635556, gi... - gi\|167635556\|ref\|ZP_02393868.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|227817295, gi... - gi\|227817295\|ref\|YP_002817304.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthra... gi\|228842569, gi... - gi\|228917151\|ref\|ZP_04080709.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar ... gi\|228929560, gi... - gi\|228929560\|ref\|ZP_04092579.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar ... gi\|228659379, gi... - gi\|229124077\|ref\|ZP_04253269.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201], gi\|22... gi\|229264381, gi... - gi\|229599973\|ref\|YP_002868793.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthra... gi\|254686997 - gi\|254686997\|ref\|ZP_05150855.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|65321879, gi\|... - gi\|65321879\|ref\|ZP_00394838.1\| COG1876: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.... gi\|254724560 - gi\|254724560\|ref\|ZP_05186343.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254736617 - gi\|254736617\|ref\|ZP_05194323.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254741655 - gi\|254741655\|ref\|ZP_05199342.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254754747 - gi\|254754747\|ref\|ZP_05206782.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|254757579 - gi\|254757579\|ref\|ZP_05209606.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthrac... gi\|49181332, gi\|... - gi\|49187405\|ref\|YP_030657.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ... gi\|47530050, gi\|... - gi\|47530050\|ref\|YP_021399.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ... gi\|30264580, gi\|... - gi\|30264580\|ref\|NP_846957.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis ...	2.0E-71	[1..246]	[1..256]
gi\|49478675, gi\|... - gi\|49478675\|ref\|YP_038565.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kon...	2.0E-71	[1..246]	[1..256]

Back

Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRWILLGI VAMILIVGVA GINYKMYKDK QAREVNVNNI FPKAKETIAN MDGDIAVISN  60
   61 PNSMLVLVNK SRRLPDGYKP PDLVIPKVRY SSEGDQEKKK MRKEAAGALE EMFQQADKER 120
  121 IFLFAVSGFR SFDRQKALNT MYKKQDGEAK TAMSSAVPGT SEHQTGLAMD ITSQSAKFQL 180
  181 ETIFGETKEG QWLSENAHKF GFVIRYTKEK ESLTGYRYEP WHVRYVGNPQ ATYLYENQLT 240
  241 LEEVAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1r44A
Description:	Crystal Structure of VanX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.579809417316389	bayes_pls_golite062009
binding	0.116181943513295	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: