YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259910, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259910, gi|....

Description	E-value	Query Range	Subject Range
gi\|75759419, gi\|... - gi\|75759419\|ref\|ZP_00739513.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillus...	3.0E-30	[1..107]	[20..126]
gi\|152977422, gi... - gi\|89201161\|ref\|ZP_01179907.1\| Phosphotransferase system PTS, lactose/cellobiose-specific IIA subuni...	2.0E-29	[1..107]	[2..108]
gi\|81429146, gi\|... - gi\|81429146\|ref\|YP_396147.1\| putative cellobiose-specific phosphotransferasesystem, enzyme IIA [Lact...	6.0E-29	[3..103]	[4..104]
gi\|229181469, gi... - gi\|229181469\|ref\|ZP_04308797.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|229147739, gi... - gi\|229147739\|ref\|ZP_04276082.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228652794, gi... - gi\|229130455\|ref\|ZP_04259411.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|229082422, gi... - gi\|229082422\|ref\|ZP_04214885.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|218900327, gi... - gi\|218900327\|ref\|YP_002448738.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus G984... gi\|206970377, gi... - gi\|206970377\|ref\|ZP_03231330.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus AH113... gi\|229193457, gi... - gi\|229193457\|ref\|ZP_04320404.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|30023243, gi\|... - gi\|30023243\|ref\|NP_834874.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillus c... gi\|228804246, gi... - gi\|228955454\|ref\|ZP_04117459.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228923933, gi... - gi\|228923933\|ref\|ZP_04087210.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228855949, gi... - gi\|228903681\|ref\|ZP_04067801.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu...	8.0E-29	[1..107]	[1..107]
gi\|116490434, gi... - gi\|48865147\|ref\|ZP_00319011.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ...	8.0E-29	[3..107]	[7..111]
gi\|228596122, gi... - gi\|229187418\|ref\|ZP_04314561.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|47570011, gi\|... - gi\|47570011\|ref\|ZP_00240673.1\| PTS system, IIA component [Bacillus cereus G9241], gi\|47553310\|gb\|EAL... gi\|218231983, gi... - gi\|218231983\|ref\|YP_002369984.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus B426... gi\|228961446, gi... - gi\|228961446\|ref\|ZP_04123059.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|225867171, gi... - gi\|225867171\|ref\|YP_002752549.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB... gi\|228624755, gi... - gi\|229158771\|ref\|ZP_04286829.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228722526, gi... - gi\|229050870\|ref\|ZP_04194422.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu...	8.0E-29	[1..107]	[1..107]
gi\|15613473, gi\|... - gi\|15613473\|ref\|NP_241776.1\| PTS system, cellobiose-specific enzyme II, A component (EIIA-cell) [Bac... gi\|25287970 - pir\|\|F83763 PTS system, cellobiose-specific enzyme II, A component (EIIA-cell) BH0910 [imported] - ...	9.0E-29	[5..107]	[8..110]
gi\|167529327, gi... - gi\|167635284\|ref\|ZP_02393599.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|167640461, gi... - gi\|167640461\|ref\|ZP_02398724.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|170687995, gi... - gi\|170687995\|ref\|ZP_02879208.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|170127345, gi... - gi\|170707788\|ref\|ZP_02898239.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|51973821, gi\|... - gi\|52140352\|ref\|YP_086477.1\| PTS system, cellobiose-specific IIA component (phosphotransferase enzym... gi\|177652940, gi... - gi\|177652940\|ref\|ZP_02935267.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|190561157, gi... - gi\|190567741\|ref\|ZP_03020653.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis Ts... gi\|196029671, gi... - gi\|196039511\|ref\|ZP_03106816.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus NVH05... gi\|196023464, gi... - gi\|196045633\|ref\|ZP_03112863.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB1... gi\|218537844, gi... - gi\|218906389\|ref\|YP_002454223.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus AH82... gi\|222098670, gi... - gi\|222098670\|ref\|YP_002532728.1\| PTS system, cellobiose-specific IIA component (phosphotransferase e... gi\|49188048, gi\|... - gi\|49188048\|ref\|YP_031301.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|49481192, gi\|... - gi\|49481192\|ref\|YP_039203.1\| PTS system, cellobiose-specific IIA component (phosphotransferase enzym... gi\|42740301, gi\|... - gi\|42784369\|ref\|NP_981616.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus ATCC 109... gi\|254757097 - gi\|254757097\|ref\|ZP_05209125.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|47530761, gi\|... - gi\|47530761\|ref\|YP_022110.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|254744343 - gi\|254744343\|ref\|ZP_05202023.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|21397675, gi\|... - gi\|65317184\|ref\|ZP_00390143.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|254737016, gi... - gi\|254737016\|ref\|ZP_05194721.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|30259915, gi\|... - gi\|30265238\|ref\|NP_847615.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis str. ... gi\|254724362 - gi\|254724362\|ref\|ZP_05186146.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|254686364 - gi\|254686364\|ref\|ZP_05150223.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis st... gi\|229604727, gi... - gi\|229604727\|ref\|YP_002869432.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis s... gi\|229187426, gi... - gi\|229187426\|ref\|ZP_04314569.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|228689075, gi... - gi\|229094308\|ref\|ZP_04225383.1\| Lichenan-specific phosphotransferase enzyme IIA component [Bacillus ... gi\|227817972, gi... - gi\|227817972\|ref\|YP_002817981.1\| PTS system, cellobiose-specific IIA component [Bacillus anthracis s... gi\|225785885, gi... - gi\|225867179\|ref\|YP_002752557.1\| PTS system, cellobiose-specific IIA component [Bacillus cereus 03BB...	9.0E-29	[2..106]	[1..105]
gi\|228683930, gi... - gi\|229099634\|ref\|ZP_04230562.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|163942892, gi... - gi\|89205073\|ref\|ZP_01183646.1\| Phosphotransferase system PTS, lactose/cellobiose-specific IIA subuni... gi\|229063865, gi... - gi\|229063865\|ref\|ZP_04200168.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228613630, gi... - gi\|229169916\|ref\|ZP_04297612.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|229136015, gi... - gi\|229136015\|ref\|ZP_04264775.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228746975, gi... - gi\|229014375\|ref\|ZP_04171494.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|228734684, gi... - gi\|229026651\|ref\|ZP_04182993.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu... gi\|229020422, gi... - gi\|229020422\|ref\|ZP_04177177.1\| PTS system, lichenan oligosaccharide-specific IIA component [Bacillu...	1.0E-28	[1..107]	[1..107]
gi\|116106390, gi... - gi\|62512732\|ref\|ZP_00384342.1\| COG1447: Phosphotransferase system cellobiose-specific component IIA ... gi\|190714067, gi... - gi\|191639765\|ref\|YP_001988931.1\| Cellobiose PTS, EIIA [Lactobacillus casei BL23], gi\|190714067\|emb\|C... gi\|227189601, gi... - gi\|227532767\|ref\|ZP_03962816.1\| PTS family lactose/cellobiose (lac) porter component IIA [Lactobacil...	1.0E-28	[1..106]	[1..108]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMTTAEQIPF QLILNSGNAR SFAMEALQFA KQGKMAEADE AMVKAKEAIN EAHHFQTELI  60
   61 QSEARGEKTE ISVLLIHAQD HLMNAITVKE LAAEFIDLYK KLEAKGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1e2aA
Description:	Enzyme IIa from lactose specific PTS, IIa-lac
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.00429001244066	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.03872487639957	bayes_pls_golite062009
transporter activity	1.32957030120524	bayes_pls_golite062009
transmembrane transporter activity	1.20211801626802	bayes_pls_golite062009
active transmembrane transporter activity	1.08511657750399	bayes_pls_golite062009
substrate-specific transporter activity	0.93495816074069	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.81702015470704	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.34582307123923	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0202700968382801	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: