YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265011, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	298 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265011, gi|....

Description	E-value	Query Range	Subject Range
gi\|47573861 - gi\|47573861\|ref\|ZP_00243898.1\| COG0320: Lipoate synthase [Rubrivivax gelatinosus PM1] gi\|124265509, gi... - gi\|124265509\|ref\|YP_001019513.1\| lipoyl synthase [Methylibium petroleiphilum PM1], gi\|124258284\|gb\|A...	8.0E-70	[5..290]	[46..332]
LIPA_XYLFM - Lipoyl synthase OS=Xylella fastidiosa (strain M12) GN=lipA PE=3 SV=1 gi\|71274929, gi\|... - gi\|71274929\|ref\|ZP_00651217.1\| Lipoate synthase [Xylella fastidiosa Dixon], gi\|71164661\|gb\|EAO14375.... gi\|71898818, gi\|... - gi\|71898818\|ref\|ZP_00680986.1\| Lipoate synthase [Xylella fastidiosa Ann-1], gi\|71731404\|gb\|EAO33467....	4.0E-69	[6..290]	[47..333]
LIPA_XYLF2 - Lipoyl synthase OS=Xylella fastidiosa (strain M23) GN=lipA PE=3 SV=1 LIPA_XYLFT - Lipoyl synthase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=lipA PE=3 SV=1	4.0E-69	[6..290]	[47..333]
LIPA_XYLFA - Lipoyl synthase OS=Xylella fastidiosa (strain 9a5c) GN=lipA PE=3 SV=3 LIPA_XYLFA - Lipoyl synthase OS=Xylella fastidiosa GN=lipA PE=3 SV=3	5.0E-69	[6..290]	[47..333]
gi\|71901785, gi\|... - gi\|71901785\|ref\|ZP_00683853.1\| Lipoate synthase [Xylella fastidiosa Ann-1], gi\|71728444\|gb\|EAO30607....	7.0E-69	[6..290]	[47..333]
LIPA_BACCZ - Lipoyl synthase OS=Bacillus cereus (strain ZK / E33L) GN=lipA PE=3 SV=1 gi\|228584391, gi... - gi\|229199120\|ref\|ZP_04325803.1\| Lipoyl synthase [Bacillus cereus m1293], gi\|228584391\|gb\|EEK42526.1\|... gi\|229141690, gi... - gi\|229141690\|ref\|ZP_04270220.1\| Lipoyl synthase [Bacillus cereus BDRD-ST26], gi\|228641758\|gb\|EEK9805... LIPA_BACC1 - Lipoyl synthase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=lipA PE=3 SV=1 LIPA_BACCQ - Lipoyl synthase OS=Bacillus cereus (strain Q1) GN=lipA PE=3 SV=1 LIPA_BACC7 - Lipoyl synthase OS=Bacillus cereus (strain AH187) GN=lipA PE=3 SV=1 gi\|206976480, gi... - gi\|206976480\|ref\|ZP_03237387.1\| lipoic acid synthetase [Bacillus cereus H3081.97], gi\|206745404\|gb\|E...	2.0E-68	[1..298]	[1..298]
LIPA_BACCR - Lipoyl synthase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 ...	3.0E-68	[1..293]	[1..293]
LIPA_XANC5 - Lipoyl synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=lipA PE=3 SV=1	4.0E-68	[5..290]	[46..333]
LIPA_BACWK - Lipoyl synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=lipA PE=3 SV=1 gi\|228647668, gi... - gi\|229135802\|ref\|ZP_04264572.1\| Lipoyl synthase [Bacillus cereus BDRD-ST196], gi\|228647668\|gb\|EEL037... gi\|229014161, gi... - gi\|229014161\|ref\|ZP_04171282.1\| Lipoyl synthase [Bacillus mycoides DSM 2048], gi\|228747115\|gb\|EEL969...	4.0E-68	[1..298]	[1..298]

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Predicted Domain #1

Region A:
Residues: [1-298]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQTEYKRK PEWLKIKLNT NENYTGLKKM MRSKNLHTVC EEAKCPNIHE CWAVRKTATF  60
   61 MILGAVCTRA CRFCAVKTGL PTELDLQEPE RVADSVVQMG LKHVVITAVA RDDLKDGGAA 120
  121 VFAETVRAVR RKNPFTSIEV LPSDMGGVEE NLKMLMDAKP DILNHNIETV RRLSNRVRAR 180
  181 AKYDRSLEFL RRAKEMQPDI PTKSSIMVGL GETREDLIEA MDDLRANNVD ILTLGQYLQP 240
  241 SKKHLPVLKY YPPAEFAELK EIALSKGFSH CEAGPLVRSS YHADEQVRSA KEKTAEAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.39794
Match:	1r30A
Description:	The Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
biotin synthase activity	2.22585029668171	bayes_pls_golite062009
radical SAM enzyme activity	2.08127882819276	bayes_pls_golite062009
catalytic activity	1.85375915825216	bayes_pls_golite062009
coproporphyrinogen oxidase activity	1.27516985221578	bayes_pls_golite062009
sulfurtransferase activity	1.26112752511053	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	0.604275066192139	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	0.35292941647096	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: