YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255847, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255847, gi|....

Description	E-value	Query Range	Subject Range
gi\|221319414 - gi\|221319414\|ref\|ZP_03600708.1\| menaquinol:cytochrome c oxidoreductase (cytochrome b/c subunit) [Bac... QCRC_BACSU - Menaquinol-cytochrome c reductase cytochrome b/c subunit OS=Bacillus subtilis GN=qcrC PE=3 SV=1 gi\|221323690 - gi\|221323690\|ref\|ZP_03604984.1\| menaquinol:cytochrome c oxidoreductase (cytochrome b/c subunit) [Bac... gi\|221314492 - gi\|221314492\|ref\|ZP_03596297.1\| menaquinol:cytochrome c oxidoreductase (cytochrome b/c subunit) [Bac... QCRC_BACSU - Menaquinol-cytochrome c reductase cytochrome b/c subunit OS=Bacillus subtilis (strain 168) GN=qcrC P...	3.0E-61	[1..255]	[1..255]
gi\|229497704, gi... - gi\|229497704\|ref\|ZP_04391404.1\| cytochrome c class I [Geobacillus sp. Y412MC52], gi\|229331582\|gb\|EEN... gi\|56420725, gi\|... - gi\|56420725\|ref\|YP_148043.1\| menaquinol-cytochrome c reductase cytochrome b/c subunit [Geobacillus k... gi\|220708813, gi... - gi\|221087163\|ref\|ZP_03556702.1\| cytochrome c class I [Geobacillus sp. Y412MC61], gi\|220708813\|gb\|EED...	6.0E-61	[1..255]	[1..254]
gi\|51977297, gi\|... - gi\|52143828\|ref\|YP_083004.1\| menaquinol-cytochrome c reductase, cytochrome c subunit [Bacillus cereu...	4.0E-60	[1..255]	[1..255]
gi\|152023800, gi... - gi\|89200983\|ref\|ZP_01179731.1\| Cytochrome c, class I [Bacillus cereus subsp. cytotoxis NVH 391-98], ...	9.0E-60	[1..255]	[1..255]
gi\|229029303, gi... - gi\|229029303\|ref\|ZP_04185393.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228781244, gi... - gi\|228978227\|ref\|ZP_04138604.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus t... gi\|228681128, gi... - gi\|229102227\|ref\|ZP_04232936.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228687075, gi... - gi\|229096115\|ref\|ZP_04227088.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|229115071, gi... - gi\|229115071\|ref\|ZP_04244481.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|74491073, gi\|... - gi\|75761439\|ref\|ZP_00741407.1\| Menaquinol-cytochrome c reductase cytochrome c subunit [Bacillus thur... gi\|228900204, gi... - gi\|228900204\|ref\|ZP_04064436.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus t... gi\|218541543, gi... - gi\|218896553\|ref\|YP_002444964.1\| menaquinol-cytochrome c reductase, cytochrome b/c subunit [Bacillus... gi\|228938735, gi... - gi\|228938735\|ref\|ZP_04101339.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus t... gi\|228907256, gi... - gi\|228907256\|ref\|ZP_04071116.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus t... gi\|228971617, gi... - gi\|228971617\|ref\|ZP_04132240.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus t... gi\|228795132, gi... - gi\|228964598\|ref\|ZP_04125707.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus t...	1.0E-59	[1..255]	[1..255]
gi\|47556903, gi\|... - gi\|47565986\|ref\|ZP_00237024.1\| cytochrome b-c complex, cytochrome b subunit, putative [Bacillus cere... gi\|42736645, gi\|... - gi\|42780725\|ref\|NP_977972.1\| menaquinol-cytochrome c reductase, cytochrome b/c subunit [Bacillus cer... gi\|206970769, gi... - gi\|206970769\|ref\|ZP_03231721.1\| menaquinol-cytochrome c reductase, cytochrome b/c subunit [Bacillus ... gi\|218235037, gi... - gi\|218235037\|ref\|YP_002366305.1\| menaquinol-cytochrome c reductase, cytochrome b/c subunit [Bacillus... gi\|228957899, gi... - gi\|228957899\|ref\|ZP_04119639.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus t... gi\|228807678, gi... - gi\|228952001\|ref\|ZP_04114097.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus t... gi\|229016881, gi... - gi\|229016881\|ref\|ZP_04173809.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228984703, gi... - gi\|228984703\|ref\|ZP_04144875.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus t... gi\|229043369, gi... - gi\|229043369\|ref\|ZP_04191086.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228738233, gi... - gi\|229023087\|ref\|ZP_04179601.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228704488, gi... - gi\|229078806\|ref\|ZP_04211359.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228713928, gi... - gi\|229069176\|ref\|ZP_04202467.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228656537, gi... - gi\|229126937\|ref\|ZP_04255948.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228674357, gi... - gi\|229109079\|ref\|ZP_04238679.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228628316, gi... - gi\|229155189\|ref\|ZP_04283301.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|229144222, gi... - gi\|229144222\|ref\|ZP_04272636.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|229189705, gi... - gi\|229189705\|ref\|ZP_04316719.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228605519, gi... - gi\|229178031\|ref\|ZP_04305403.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c...	1.0E-59	[1..255]	[1..255]
gi\|52786133, gi\|... - gi\|52786133\|ref\|YP_091962.1\| QcrC [Bacillus licheniformis ATCC 14580], gi\|52348635\|gb\|AAU41269.1\| Qc...	3.0E-59	[1..255]	[1..255]
gi\|163861637, gi... - gi\|89204938\|ref\|ZP_01183513.1\| Cytochrome c, class I [Bacillus weihenstephanensis KBAB4], gi\|8915723... gi\|228750332, gi... - gi\|229010932\|ref\|ZP_04168128.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus m... gi\|228651138, gi... - gi\|229132432\|ref\|ZP_04261286.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|229058260, gi... - gi\|229058260\|ref\|ZP_04196648.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c... gi\|228617045, gi... - gi\|229166471\|ref\|ZP_04294227.1\| Menaquinol-cytochrome c reductase cytochrome b/c subunit [Bacillus c...	3.0E-59	[1..255]	[1..255]
gi\|1384049 - gi\|1384049\|dbj\|BAA12118.1\| cytochrome c1 [Geobacillus stearothermophilus] QCRC_GEOTD - Menaquinol-cytochrome c reductase cytochrome b/c subunit OS=Geobacillus thermodenitrificans GN=qcrC ...	8.0E-59	[1..247]	[1..246]
gi\|23099229, gi\|... - gi\|23099229\|ref\|NP_692695.1\| menaquinol-cytochrome-c reductase cytochrome b:c subunit [Oceanobacillu...	1.0E-58	[1..255]	[1..255]

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Predicted Domain #1

Region A:
Residues: [1-176]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHRGKGMKFV GDSRVPVARK PNIPKDYSEY PGKTEAFWPN FLLKEWMVGA VFLIGYLCLT  60
   61 VAHPSPLERM ADPTDAGYIP LPDWYFLFLY QLLKYSYASG SFTVIGAFIM PGIAFGALLL 120
  121 APFLDRGPER RPLKRPVATG FMLLSVASII FLTWESVAHH DWEAAKKQGA IVKTAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.39794
Match:	1bccC
Description:	Mitochondrial cytochrome b subunit, C-terminal domain; Mitochondrial cytochrome b subunit, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [177-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDKNDDGYKL MQKNTCLTCH GDNLQGGAAA PALQNLTLKP EEIAKIAKDG KGAMPKGIFK  60
   61 GTDEELKKLS EFIAKYNKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	1h1oA
Description:	Cytochrome c4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits