YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49480730, gi\|...
Organism:	Bacillus thuringiensis serovar konkukian str. 97-27
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49480730, gi|....

Description	E-value	Query Range	Subject Range
gi\|228856273, gi... - gi\|228903312\|ref\|ZP_04067443.1\| Spore germination protein GerPF-like protein [Bacillus thuringiensis... gi\|74493638, gi\|... - gi\|75758872\|ref\|ZP_00738984.1\| Spore germination protein PF [Bacillus thuringiensis serovar israelen... gi\|229181122, gi... - gi\|229181122\|ref\|ZP_04308454.1\| Spore germination protein GerPF-like protein [Bacillus cereus 172560...	104.0	[0..1]	[71..7]
gi\|29898424, gi\|... - gi\|30022865\|ref\|NP_834496.1\| spore germination protein PF [Bacillus cereus ATCC 14579], gi\|29898424\|...	103.0	[0..1]	[71..5]
gi\|42783997, gi\|... - gi\|42783997\|ref\|NP_981244.1\| spore germination protein GerPF-like protein [Bacillus cereus ATCC 1098...	102.0	[0..1]	[71..7]
gi\|47565232, gi\|... - gi\|47565232\|ref\|ZP_00236275.1\| spore germination protein PF-related protein [Bacillus cereus G9241],...	100.0	[0..1]	[71..1]
gi\|47778357, gi\|... - gi\|47778357\|ref\|YP_022714.1\| spore germination protein gerpf-like protein [Bacillus anthracis str. '... gi\|30259541, gi\|... - gi\|30264866\|ref\|NP_847243.1\| spore germination protein GerPF-like protein [Bacillus anthracis str. A... gi\|65322165 - gi\|65322165\|ref\|ZP_00395124.1\| hypothetical protein Bant_01005698 [Bacillus anthracis str. A2012] gi\|228917453, gi... - gi\|228917453\|ref\|ZP_04081003.1\| Spore germination protein GerPF-like protein [Bacillus thuringiensis... gi\|228948547, gi... - gi\|228948547\|ref\|ZP_04110827.1\| Spore germination protein GerPF-like protein [Bacillus thuringiensis... gi\|228929851, gi... - gi\|228929851\|ref\|ZP_04092866.1\| Spore germination protein GerPF-like protein [Bacillus thuringiensis... gi\|229124365, gi... - gi\|229124365\|ref\|ZP_04253554.1\| Spore germination protein GerPF-like protein [Bacillus cereus 95/820...	100.0	[0..1]	[71..7]
gi\|196044025, gi... - gi\|196044025\|ref\|ZP_03111262.1\| spore germination protein GerPF-like protein [Bacillus cereus 03BB10... gi\|196041440, gi... - gi\|196041440\|ref\|ZP_03108733.1\| spore germination protein GerPF-like protein [Bacillus cereus NVH059... gi\|51974173, gi\|... - gi\|52140704\|ref\|YP_086124.1\| spore germination protein [Bacillus cereus E33L], gi\|51974173\|gb\|AAU157... gi\|225785769, gi... - gi\|225866792\|ref\|YP_002752170.1\| spore germination protein GerPF-like protein [Bacillus cereus 03BB1...	99.0	[0..1]	[71..1]
gi\|163942529, gi... - gi\|89204292\|ref\|ZP_01182870.1\| spore germination protein GerPF-like protein [Bacillus weihenstephane... gi\|228747253, gi... - gi\|229013997\|ref\|ZP_04171121.1\| Spore germination protein GerPF-like protein [Bacillus mycoides DSM ... gi\|228647828, gi... - gi\|229135648\|ref\|ZP_04264426.1\| Spore germination protein GerPF-like protein [Bacillus cereus BDRD-S... gi\|229062491, gi... - gi\|229062491\|ref\|ZP_04199804.1\| Spore germination protein GerPF-like protein [Bacillus cereus AH603]... gi\|229169538, gi... - gi\|229169538\|ref\|ZP_04297242.1\| Spore germination protein GerPF-like protein [Bacillus cereus AH621]...	92.0	[0..1]	[71..7]
gi\|221313234 - gi\|221313234\|ref\|ZP_03595039.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. NC... GERPA_BACSU - Probable spore germination protein GerPA OS=Bacillus subtilis (strain 168) GN=gerPA PE=1 SV=1 gi\|221322432 - gi\|221322432\|ref\|ZP_03603726.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. SM... gi\|221318157 - gi\|221318157\|ref\|ZP_03599451.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. JH... GEPA_BACSU, GERP... - Probable spore germination protein gerPA OS=Bacillus subtilis GN=gerPA PE=1 SV=1, (O06721) Probable ...	84.0	[0..1]	[67..1]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSVVEGVII ENCNGTINLG DKYNVQPIEK TQAYNGSGSS NTGIKVQTFS GISTADVGDS  60
   61 DANDQGIQFT L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.642	g.41.17	Description not found.
View	Download	0.616	d.76.1	GYF domain
View	Download	0.604	b.122.1	PUA domain-like
View	Download	0.602	d.317.1	Description not found.
View	Download	0.557	g.79.1	Description not found.
View	Download	0.524	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.524	d.58.3	Protease propeptides/inhibitors
View	Download	0.461	d.50.1	dsRNA-binding domain-like
View	Download	0.456	b.40.6	MOP-like
View	Download	0.430	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.408	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.379	d.50.1	dsRNA-binding domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits