YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259242, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259242, gi|....

Description	E-value	Query Range	Subject Range
gi\|222097984, gi... - gi\|222097984\|ref\|YP_002532041.1\| succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus Q... gi\|217962001, gi... - gi\|217962001\|ref\|YP_002340571.1\| succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus A... gi\|206744065, gi... - gi\|206977764\|ref\|ZP_03238655.1\| succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus H3... gi\|229198666, gi... - gi\|229198666\|ref\|ZP_04325367.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus m12... gi\|42783691, gi\|... - gi\|42783691\|ref\|NP_980938.1\| succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus ATCC ... gi\|229141248, gi... - gi\|229141248\|ref\|ZP_04269787.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus BDR...	3.0E-60	[1..208]	[1..208]
gi\|228836466, gi... - gi\|228923260\|ref\|ZP_04086550.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus thuringien... gi\|228849293, gi... - gi\|228910341\|ref\|ZP_04074157.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus thuringien... gi\|228798917, gi... - gi\|228960782\|ref\|ZP_04122420.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus thuringien... gi\|228817907, gi... - gi\|228941695\|ref\|ZP_04104242.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus thuringien... gi\|228785024, gi... - gi\|228974621\|ref\|ZP_04135187.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus thuringien... gi\|228792102, gi... - gi\|228967611\|ref\|ZP_04128634.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus thuringien... gi\|228723209, gi... - gi\|229048222\|ref\|ZP_04193791.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus AH6... gi\|228778416, gi... - gi\|228981216\|ref\|ZP_04141516.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus thuringien... gi\|228684472, gi... - gi\|229098974\|ref\|ZP_04229909.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus Roc... gi\|229081769, gi... - gi\|229081769\|ref\|ZP_04214262.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus Roc... gi\|228671543, gi... - gi\|229111979\|ref\|ZP_04241523.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus Roc... gi\|229105141, gi... - gi\|229105141\|ref\|ZP_04235792.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus Roc... gi\|228653717, gi... - gi\|229129801\|ref\|ZP_04258768.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus BDR... gi\|229118003, gi... - gi\|229118003\|ref\|ZP_04247363.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus Roc... gi\|229158125, gi... - gi\|229158125\|ref\|ZP_04286194.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus ATC... gi\|229147075, gi... - gi\|229147075\|ref\|ZP_04275435.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus BDR... gi\|196044891, gi... - gi\|196044891\|ref\|ZP_03112125.1\| succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus 03... gi\|228602760, gi... - gi\|229180782\|ref\|ZP_04308120.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus 172... gi\|206969859, gi... - gi\|206969859\|ref\|ZP_03230813.1\| succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus AH... gi\|229175225, gi... - gi\|229175225\|ref\|ZP_04302741.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus MM3... gi\|228590805, gi... - gi\|229192715\|ref\|ZP_04319674.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus ATC... gi\|229186750, gi... - gi\|229186750\|ref\|ZP_04313908.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus BGS... gi\|218231882, gi... - gi\|218231882\|ref\|YP_002369313.1\| succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus B... gi\|218899673, gi... - gi\|218899673\|ref\|YP_002448084.1\| succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus G... gi\|75762577, gi\|... - gi\|75762577\|ref\|ZP_00742430.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus thuringiens... gi\|30022596, gi\|... - gi\|30022596\|ref\|NP_834227.1\| succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus ATCC 1... gi\|118479670, gi... - gi\|118479670\|ref\|YP_896821.1\| succinate dehydrogenase subunit C [Bacillus thuringiensis str. Al Haka... gi\|52140983, gi\|... - gi\|52140983\|ref\|YP_085844.1\| succinate dehydrogenase cytochrome B-558 subunit [Bacillus cereus E33L]...	6.0E-60	[1..208]	[1..208]
gi\|228747639, gi... - gi\|229013717\|ref\|ZP_04170846.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus mycoides D... gi\|229135350, gi... - gi\|229135350\|ref\|ZP_04264140.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus BDR... gi\|228717094, gi... - gi\|229062200\|ref\|ZP_04199523.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus AH6... gi\|228614226, gi... - gi\|229169243\|ref\|ZP_04296956.1\| Succinate dehydrogenase cytochrome b558 subunit [Bacillus cereus AH6... gi\|89156784, gi\|... - gi\|89205300\|ref\|ZP_01183871.1\| Succinate dehydrogenase, cytochrome b558 subunit [Bacillus weihenstep...	1.0E-59	[1..208]	[1..208]
gi\|152025668, gi... - gi\|89200345\|ref\|ZP_01179099.1\| Succinate dehydrogenase, cytochrome b558 subunit [Bacillus cereus sub...	2.0E-59	[1..208]	[1..208]
gi\|25284588 - pir\|\|E84036 succinate dehydrogenase cytochrome b558 sdhC [imported] - Bacillus halodurans (strain C-... gi\|15615655, gi\|... - gi\|15615655\|ref\|NP_243959.1\| succinate dehydrogenase cytochrome b-558 [Bacillus halodurans C-125], g...	1.0E-55	[2..207]	[3..208]
gi\|56910672, gi\|... - gi\|56964429\|ref\|YP_176160.1\| succinate dehydrogenase cytochrome b558 subunit [Bacillus clausii KSM-K...	3.0E-54	[2..201]	[3..202]
gi\|221324311 - gi\|221324311\|ref\|ZP_03605605.1\| succinate dehydrogenase (cytochrome b558 subunit) [Bacillus subtilis... gi\|221320029 - gi\|221320029\|ref\|ZP_03601323.1\| succinate dehydrogenase (cytochrome b558 subunit) [Bacillus subtilis... gi\|221315111 - gi\|221315111\|ref\|ZP_03596916.1\| succinate dehydrogenase (cytochrome b558 subunit) [Bacillus subtilis... DHSC_BACSU - Succinate dehydrogenase cytochrome b558 subunit OS=Bacillus subtilis GN=sdhC PE=1 SV=2 DHSC_BACSU - Succinate dehydrogenase cytochrome b558 subunit OS=Bacillus subtilis (strain 168) GN=sdhC PE=1 SV=2	4.0E-53	[3..201]	[4..202]
gi\|52786725, gi\|... - gi\|52786725\|ref\|YP_092554.1\| hypothetical protein BLi02994 [Bacillus licheniformis ATCC 14580], gi\|5...	6.0E-52	[3..201]	[4..202]
gi\|56381050, gi\|... - gi\|56421208\|ref\|YP_148526.1\| succinate dehydrogenase (cytochrome b558 subunit) [Geobacillus kaustoph...	4.0E-51	[3..200]	[4..201]
gi\|68008305, gi\|... - gi\|68055099\|ref\|ZP_00539247.1\| Succinate dehydrogenase, cytochrome b558 subunit [Exiguobacterium sib...	2.0E-50	[3..200]	[4..201]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGREYTFRK WHSLMGVIPV GVFLTQHLIV NNFATRGAEA FNKAAGFMEL LPFRYALEIF  60
   61 IIFLPILYHA IYGLYIAFTA KNNAVSYGYF RNWMFVFQRI SGIVTLIFIA WHVWETRIQA 120
  121 MLGKEVNYDM MADILNNPAM FAFYLVGVVS TIFHFANGLW TFCISWGITV SPRSQRISTY 180
  181 VTLAIFLGLS YVGVSALLAF IDPQLANQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.69897
Match:	2bs2C
Description:	No description for 2bs2C was found.

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	3.77307162030081	bayes_pls_golite062009
oxidoreductase activity	2.006262138179	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	1.40315688445419	bayes_pls_golite062009
electron carrier activity	1.35460962236208	bayes_pls_golite062009
catalytic activity	1.34226547326392	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: