YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264582, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264582, gi|....

Description	E-value	Query Range	Subject Range
gi\|87200336, gi\|... - gi\|87200336\|ref\|YP_497593.1\| succinate dehydrogenase iron-sulfur subunit [Novosphingobium aromaticiv...	3.0E-57	[2..241]	[24..258]
gi\|85374186, gi\|... - gi\|85374186\|ref\|YP_458248.1\| succinate dehydrogenase iron-sulfur subunit [Erythrobacter litoralis HT...	3.0E-56	[7..241]	[29..258]
gi\|94423595, gi\|... - gi\|94496919\|ref\|ZP_01303493.1\| succinate dehydrogenase iron-sulfur protein [Sphingomonas sp. SKA58],...	1.0E-55	[7..243]	[30..262]
SDHB_XENLA - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus laevis GN=sdhb PE...	1.0E-55	[4..244]	[42..278]
gi\|85708776, gi\|... - gi\|85708776\|ref\|ZP_01039842.1\| succinate dehydrogenase [Erythrobacter sp. NAP1], gi\|85690310\|gb\|EAQ3...	2.0E-55	[7..243]	[29..260]
SDHB_RAT - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus GN=Sdhb...	3.0E-55	[4..248]	[42..282]
gi\|47222756 - gi\|47222756\|emb\|CAG01723.1\| unnamed protein product [Tetraodon nigroviridis]	4.0E-55	[4..245]	[40..277]
gi\|12833468 - gi\|12833468\|dbj\|BAB22534.1\| unnamed protein product [Mus musculus]	5.0E-55	[4..248]	[42..282]

Back

Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKTIRLII TRQDGPDAQA FDQEFEIPYR PNMNIISALM EIRRNPVDSK GNQTTPIAWD  60
   61 MNCLEEVCGA CSMVINGKPR QSCTALIDQL EQPIRLKPMK TFPVVRDLQV DRSRMFNALK 120
  121 RVKAWIPIDG TYDLGPGPRM PEKKRQWAYE LSKCMTCGVC LESCPNVNSK SDFIGPAPLS 180
  181 QARLFNSHPT GEMHKADRLR AIMGDGGLAN CGNSQNCVQS CPKGIPLTTS IAALNRDTTI 240
  241 QSFKDFFGSD NNY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1yq3B
Description:	Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits