YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|65317398, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	691 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|65317398, gi|....

Description	E-value	Query Range	Subject Range
gi\|113869643, gi... - gi\|113869643\|ref\|YP_728132.1\| carbon starvation protein A [Ralstonia eutropha H16], gi\|113528419\|emb...	0.0	[1..687]	[1..687]
gi\|72120512, gi\|... - gi\|73543099\|ref\|YP_297619.1\| carbon starvation protein CstA [Ralstonia eutropha JMP134], gi\|72120512...	0.0	[1..687]	[1..687]
gi\|7741957 - gi\|7741957\|gb\|AAF69024.1\| unknown [Pseudomonas putida]	0.0	[2..684]	[5..687]
gi\|93356357, gi\|... - gi\|94312505\|ref\|YP_585715.1\| carbon starvation protein CstA [Ralstonia metallidurans CH34], gi\|93356...	0.0	[1..687]	[1..687]
gi\|89205961, gi\|... - gi\|89205961\|ref\|ZP_01184526.1\| Carbon starvation protein CstA [Bacillus weihenstephanensis KBAB4], g...	0.0	[1..691]	[1..691]
tr\|I7BRC9\|I7BRC9... - Inner membrane protein yjiY OS=Pseudomonas putida (strain DOT-T1E) GN=yjiY PE=4 SV=1 gi\|26991325, gi\|... - gi\|26991325\|ref\|NP_746750.1\| carbon starvation protein CstA [Pseudomonas putida KT2440], gi\|24986385... gi\|148513763, gi... - gi\|82738067\|ref\|ZP_00900907.1\| carbon starvation protein CstA [Pseudomonas putida F1], gi\|82714844\|g...	0.0	[2..685]	[5..688]
gi\|83747166, gi\|... - gi\|83747166\|ref\|ZP_00944209.1\| Carbon starvation protein A [Ralstonia solanacearum UW551], gi\|837261...	0.0	[1..685]	[40..724]
gi\|124266218, gi... - gi\|124266218\|ref\|YP_001020222.1\| putative carbon starvation A transmembrane protein [Methylibium pet... gi\|47572825 - gi\|47572825\|ref\|ZP_00242866.1\| COG1966: Carbon starvation protein, predicted membrane protein [Rubri...	0.0	[1..686]	[1..686]
gi\|115359629, gi... - gi\|74018756\|ref\|ZP_00689376.1\| Carbon starvation protein CstA [Burkholderia ambifaria AMMD], gi\|7260...	0.0	[1..687]	[1..687]
gi\|134135594, gi... - gi\|67542257\|ref\|ZP_00420194.1\| Carbon starvation protein CstA [Burkholderia vietnamiensis G4], gi\|67...	0.0	[1..687]	[1..687]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLKSILLW GVIAAVGAGA FGVIALSQGE TINAVWLLVA AVCVYAVAYR FYSRFIARKV  60
   61 FGLDNNRQTP AHTLNDGKDY VPTNKWVLFG HHFAAIAGAG PLVGPILAAQ MGYLPGTIWI 120
  121 IVG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVVAGAVQDF IILFASMRRN GKSLGEMIKD EIGPVTGLIA MIGILGIMII LLAVLALVVV  60
   61 KALVGSPWGM FTIAATIPIA ILMGVYMRYI RPGRVGEGSA IGIILLILSL IGGQYVAENP 120
  121 ALASMFTF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [252-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGETIAIMLI VYGFIASALP VWMLLAPRDY LSTFLKVGTI VGLAIGILIV APDLQMPAVS  60
   61 KFIDGTGPVF SGNLFPFLFI TIACGAVSGF HALVSSGTTP KMIEQEGHAQ PIGYGAMLME 120
  121 SFVAAMAMIA ACVLTPGTYF AINSPAALIG TDVSQAAQVI SSWGFAITPN ELKDLAVNVG 180
  181 EQTILSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [439-543]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGGAPTLAIG MAYIFSQVIG GTAMMAFWYH FAILFEALFI LTTIDAGTRV GRFMIQDILG  60
   61 HVYKPFGKTD STLANVIATT LCVLGWGYFL YQGVVDPLGG INTLW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [544-691]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLFGIANQML AGIALLLGTT ILFKMGKKAY VWVTLIPTVG LLIVTMTAGY QKLFHENPKI  60
   61 GFLSHAKVFQ GALDEGKVLA PAKNVAQMKQ IIFNDYIDAA LCGIFMIVVI AVLISALRIW 120
  121 IQVLRNKPMP LKEAPYIPRD ESESRNYA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits