YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49480312, gi\|...
Organism:	Bacillus thuringiensis serovar konkukian str. 97-27
Length:	467 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49480312, gi|....

Description	E-value	Query Range	Subject Range
gi\|34763955, gi\|... - gi\|34763955\|ref\|ZP_00144850.1\| NA+/H+ ANTIPORTER NHAC [Fusobacterium nucleatum subsp. vincentii ATCC...	1.0E-53	[1..464]	[2..464]
gi\|42736831, gi\|... - gi\|42780910\|ref\|NP_978157.1\| Na+/H+ antiporter NhaC [Bacillus cereus ATCC 10987], gi\|42736831\|gb\|AAS...	9.0E-53	[1..467]	[1..467]
gi\|19713352, gi\|... - gi\|19713352\|gb\|AAL94161.1\| NA+/H+ antiporter NHAC [Fusobacterium nucleatum subsp. nucleatum ATCC 255...	1.0E-52	[2..464]	[4..465]
gi\|89156941, gi\|... - gi\|89205198\|ref\|ZP_01183770.1\| Na+/H+ antiporter NhaC [Bacillus weihenstephanensis KBAB4], gi\|891569...	1.0E-52	[1..467]	[1..467]
gi\|52143648, gi\|... - gi\|52143648\|ref\|YP_083180.1\| Na+/H+ antiporter [Bacillus cereus E33L], gi\|51977117\|gb\|AAU18667.1\| Na...	2.0E-52	[1..467]	[1..467]
gi\|47557485, gi\|... - gi\|47565495\|ref\|ZP_00236536.1\| Na+/H+ antiporter NhaC [Bacillus cereus G9241], gi\|47557485\|gb\|EAL158...	6.0E-52	[1..467]	[1..467]
gi\|228964805, gi... - gi\|228964805\|ref\|ZP_04125911.1\| Malate-2H(+)/Na(+)-lactate antiporter [Bacillus thuringiensis serova... gi\|218896748, gi... - gi\|218896748\|ref\|YP_002445159.1\| Na+/H+ antiporter NhaC [Bacillus cereus G9842], gi\|218544478\|gb\|ACK... gi\|75758976, gi\|... - gi\|75758976\|ref\|ZP_00739085.1\| MALATE-2H+/LACTATE-NA+ ANTIPORTER [Bacillus thuringiensis serovar isr... gi\|228900395, gi... - gi\|228900395\|ref\|ZP_04064624.1\| Malate-2H(+)/Na(+)-lactate antiporter [Bacillus thuringiensis IBL 42...	3.0E-51	[1..467]	[1..467]
gi\|89335845, gi\|... - gi\|89896397\|ref\|YP_519884.1\| hypothetical protein DSY3651 [Desulfitobacterium hafniense Y51], gi\|893...	4.0E-51	[3..466]	[6..469]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVRLPSML EIIVLLLLFL AVVFSFQTIF DLPIQLALFI SWFLVIALGL RLGFRYQELQ  60
   61 DAITKGISNG LEAILILVAV GALIGTWIAG GIVPTLIYYG LEFIHPSIFL LATLIICSIT 120
  121 SIATGTSWGT VGTAGIAMMA IGEGLGLPLP LVAGAVLSGA YFGDKLSPLS DSTVLAASMA 180
  181 KVDVIAHVRA MLVLDVPAYI ITSIMFTVAG WMYGGDN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [218-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDLNRVEFLK ESLLKHFDIK IWMLVPAIIV IVLLAMKKPS MPTIAMGALL GAIWATVFQG  60
   61 MHFGDAIGTA YNGFSIQSGV EFVDKLLNRG GINGMLGSVA VIIFGL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [324-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFGGLLEKLG VLKVIVSKFE KKLNSAGNVT LSTLIVAFLA NIFGCAMYVS LILTPKIMQE  60
   61 SYDKLKIDRR VLARNSEVGG TLTSGMVPWS DNGIFMAGIL GVATISYIPF MWLSFVSLIL 120
  121 AVIYGYTGKF IWYVDDAEKG KEAS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits