YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260927, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260927, gi|....

Description	E-value	Query Range	Subject Range
gi\|47564718, gi\|... - gi\|47564718\|ref\|ZP_00235762.1\| transcriptional regulator, putative [Bacillus cereus G9241], gi\|47558...	380.0	[0..1]	[398..1]
gi\|163938700, gi... - gi\|89207056\|ref\|ZP_01185604.1\| Cell envelope-related transcriptional attenuator [Bacillus weihenstep...	377.0	[0..1]	[398..1]
gi\|42735869, gi\|... - gi\|42779951\|ref\|NP_977198.1\| LytR family transcription antiterminator [Bacillus cereus ATCC 10987], ...	372.0	[0..1]	[398..1]
gi\|51978011, gi\|... - gi\|52144542\|ref\|YP_082285.1\| LytR family transcriptional regulator [Bacillus cereus E33L], gi\|519780...	366.0	[0..1]	[398..1]
gi\|65318205 - gi\|65318205\|ref\|ZP_00391164.1\| COG1316: Transcriptional regulator [Bacillus anthracis str. A2012] gi\|228833672, gi... - gi\|228925960\|ref\|ZP_04089041.1\| Transcriptional regulator, LytR [Bacillus thuringiensis serovar pond...	366.0	[0..1]	[398..13]
gi\|75763635, gi\|... - gi\|75763635\|ref\|ZP_00743325.1\| Transcriptional regulator, LytR family [Bacillus thuringiensis serova...	360.0	[0..1]	[360..13]
gi\|229108387, gi... - gi\|229108387\|ref\|ZP_04238004.1\| Transcriptional regulator, LytR [Bacillus cereus Rock1-15], gi\|22867... gi\|228640010, gi... - gi\|229143508\|ref\|ZP_04271934.1\| Transcriptional regulator, LytR [Bacillus cereus BDRD-ST24], gi\|2286... gi\|229126214, gi... - gi\|229126214\|ref\|ZP_04255232.1\| Transcriptional regulator, LytR [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|30018960, gi\|... - gi\|30018960\|ref\|NP_830591.1\| LytR family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|...	359.0	[0..1]	[398..13]
gi\|152023225, gi... - gi\|89200490\|ref\|ZP_01179243.1\| Cell envelope-related transcriptional attenuator [Bacillus cereus sub...	350.0	[0..1]	[372..1]
gi\|49478970, gi\|... - gi\|49478970\|ref\|YP_037669.1\| transcriptional regulator LytR, attenuator for lytABC and lytR expressi...	336.0	[0..1]	[355..1]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQNPSLQEN TRSKPKKSKK KIKIIISVIL FFLIVGGGYT WFLVNKASSA VRNAAHDLAR  60
   61 GDKSDLRDKA VKPITNNVSV LVMGVDESDV RGKEYGEAIR TDALLLATFN KDS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTVKLLSIPR DTYTYIPVEK KKDKITHAHA YGSTKNGKDG GPQASIDAVE KLLNVPVDYF  60
   61 VKFNFKSFMK IVDDLGGIEV DVPVEFTEQD SNDNADAIHL KKGVQKLNSE EALALARTRH 120
  121 IDSDAMRGQR QQLVIEAILE KLTSVGSVTK VGNIIDDING QFVT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.853872
Match:	PF03816.3
Description:	No description for PF03816.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [278-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLTFDDMLSF YKYGADSSIE KLQIQGDDCY MEKGDDTCSK SAGGGRTYFY NPDKKELAKV  60
   61 TNDLRTHLGL PAYTKTDSDS KKTSTEKTKE SKSENSSERE SSNNESKNSN EDKETSSNDN 120
  121 E

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits