YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|65318214, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	436 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|65318214, gi|....

Description	E-value	Query Range	Subject Range
gi\|228628888, gi... - gi\|229154490\|ref\|ZP_04282607.1\| Cellobiose PTS, EIIC [Bacillus cereus ATCC 4342], gi\|228628888\|gb\|EE... gi\|229120429, gi... - gi\|229120429\|ref\|ZP_04249676.1\| Cellobiose PTS, EIIC [Bacillus cereus 95/8201], gi\|228663014\|gb\|EEL1... gi\|228925968, gi... - gi\|228925968\|ref\|ZP_04089049.1\| Cellobiose PTS, EIIC [Bacillus thuringiensis serovar pondicheriensis... gi\|42735878, gi\|... - gi\|42779960\|ref\|NP_977207.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus ATCC 109...	1.0E-63	[1..436]	[1..436]
gi\|89208355, gi\|... - gi\|89208355\|ref\|ZP_01186866.1\| PTS lactose/cellobiose IIC component [Bacillus weihenstephanensis KBA...	3.0E-63	[1..436]	[1..436]
gi\|29894510, gi\|... - gi\|30018968\|ref\|NP_830599.1\| PTS system, diacetylchitobiose-specific IIC component [Bacillus cereus ...	3.0E-63	[1..436]	[2..437]
gi\|206744545, gi... - gi\|206977229\|ref\|ZP_03238127.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus H3081... gi\|228588358, gi... - gi\|229195129\|ref\|ZP_04321904.1\| Cellobiose PTS, EIIC [Bacillus cereus m1293], gi\|228588358\|gb\|EEK464... gi\|52144535, gi\|... - gi\|52144535\|ref\|YP_082293.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus E33L], g...	4.0E-63	[1..436]	[1..436]
gi\|28377173, gi\|... - gi\|28377173\|ref\|NP_784065.1\| cellobiose PTS, EIIC [Lactobacillus plantarum WCFS1], gi\|28270004\|emb\|C...	6.0E-63	[1..425]	[20..444]
PTJC_BACSU, PTCC... - Lichenan permease IIC component OS=Bacillus subtilis GN=licC PE=2 SV=1, (P46317) PTS system, lichena... gi\|221321062 - gi\|221321062\|ref\|ZP_03602356.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIC compone... gi\|221316151 - gi\|221316151\|ref\|ZP_03597956.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIC compone... gi\|221325347 - gi\|221325347\|ref\|ZP_03606641.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIC compone... PTJC_BACSU - Lichenan permease IIC component OS=Bacillus subtilis (strain 168) GN=licC PE=2 SV=1	1.0E-62	[1..436]	[1..444]
gi\|50914988, gi\|... - gi\|50914988\|ref\|YP_060960.1\| PTS system, lactose-specific IIBC component [Streptococcus pyogenes MGA...	6.0E-62	[1..434]	[1..430]
gi\|50591133, gi\|... - gi\|81096888\|ref\|ZP_00875214.1\| Phosphotransferase system, lactose/cellobiose-specific IIB subunit:PT...	9.0E-62	[1..433]	[1..429]
PTLCB_STAHJ - PTS system lactose-specific EIICB component OS=Staphylococcus haemolyticus (strain JCSC1435) GN=lacE...	1.0E-61	[1..430]	[1..426]
gi\|94991211, gi\|... - gi\|94991211\|ref\|YP_599311.1\| PTS system, lactose-specific IIBC component [Streptococcus pyogenes MGA...	1.0E-61	[1..434]	[1..430]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGFMSFMEQ KIMPTTQKIA GQRHLLAIRN GVISTLPLTI VGSFFVIFLN LPIDAYMEWI  60
   61 APFRHILDIP FRFTVGLMAL YAAFGVGASL ANFYQLNQLS AGLLSVLAFL LASVEPIQIT 120
  121 KAVPGVIDAG RYISVGTLSA TSLFGAIVTA LIAVEIYHFM IK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [163-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HNISIKLPDS VPPAVSNSFA ALIPTLAVIL LFWGIRYGLK FDVNTTITYL IAPLKSVLVG  60
   61 NNLFGGLLTV FLIVFFWSFG IHGPAILGPI IRPMWDSAIL ENMEVFTATG NAHQLPNLFT 120
  121 EQFIQWFVWI GGSGSTLALV IMFMFSKSKF LKELGRLSFV PGLFNI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [329-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEPIIFGAPI VMNPILIIPF VITPLVTTTV SYFAVVSGMI PLMMAKLPFT MLAPIAAVIS  60
   61 TDWTIMAGVL VLVNFVISFV IYYPFFKMYE KQQLAGEEKE KCSEQLSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits