YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254220, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	352 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254220, gi|....

Description	E-value	Query Range	Subject Range
gi\|163860738, gi... - gi\|89206137\|ref\|ZP_01184699.1\| transport system permease protein [Bacillus weihenstephanensis KBAB4]...	7.0E-70	[1..352]	[1..352]
gi\|42735680, gi\|... - gi\|42779763\|ref\|NP_977010.1\| iron compound ABC transporter, permease protein [Bacillus cereus ATCC 1...	3.0E-69	[1..352]	[1..352]
gi\|51978164, gi\|... - gi\|52144695\|ref\|YP_082133.1\| iron(III) dicitrate ABC transporter, permease [Bacillus cereus E33L], g...	3.0E-69	[1..352]	[1..352]
gi\|76167036, gi\|... - gi\|76257950\|ref\|ZP_00765607.1\| transport system permease protein [Chloroflexus aurantiacus J-10-fl],...	4.0E-69	[9..351]	[52..389]
gi\|114845489, gi... - gi\|167039782\|ref\|YP_001662767.1\| transport system permease protein [Thermoanaerobacter sp. X514], gi... gi\|167037070, gi... - gi\|76796307\|ref\|ZP_00778672.1\| transport system permease protein [Thermoanaerobacter ethanolicus ATC... gi\|241884179, gi... - gi\|241903412\|ref\|ZP_04788136.1\| transport system permease protein [Thermoanaerobacter brockii subsp.... gi\|242230699, gi... - gi\|242257758\|ref\|ZP_04802610.1\| transport system permease protein [Thermoanaerobacter sp. X513], gi\|...	2.0E-68	[20..351]	[18..353]
gi\|214034358, gi... - gi\|254479701\|ref\|ZP_05092994.1\| ABC transporter, FeCT family, permease protein [Carboxydibrachium pa... gi\|20808280 - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon... gi\|20516881, gi\|... - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon...	3.0E-68	[1..351]	[1..353]
Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii (strain ATCC 43067... Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii GN=MJ0087 PE=3 SV=...	5.0E-68	[20..351]	[12..347]
gi\|67987421, gi\|... - gi\|69285730\|ref\|ZP_00617069.1\| transport system permease protein [Kineococcus radiotolerans SRS30216...	2.0E-67	[44..350]	[580..881]
gi\|45358745, gi\|... - gi\|45358745\|ref\|NP_988302.1\| transport system permease protein [Methanococcus maripaludis S2], gi\|45...	4.0E-67	[21..351]	[14..348]
gi\|25296945 - pir\|\|AB2129 iron(III) dicitrate transport system permease protein all2585 [imported] - Nostoc sp. (s... gi\|17230077, gi\|... - gi\|17230077\|ref\|NP_486625.1\| iron(III) dicitrate transport system permease protein [Nostoc sp. PCC 7...	6.0E-67	[9..351]	[8..345]

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Predicted Domain #1

Region A:
Residues: [1-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKYIPFRIG KGELSFLMYK RACLVLFSLL VVLIGLFFAS AGMGDMKIAP YDVWQAITGN  60
   61 GDAMSNMVVN KFRMPRILIA ILVGIALAVA GCILQGLVRN PLASPDIIGI TGGASVAVVL 120
  121 FLAIFSDKNN ALTVSIHYMP LAAFIGATIV ALFVYLFAWR NDGLSPISLV LIGVGFWALT 180
  181 KAATTLFMLL APIYQASQAN VWITGTVYGS SWQNVMVLAP WVLILTVISF IAARHLNAQE 240
  241 LGDDIAVGLG VPLTKSRIFM LLLSTALIGG AVAFAGGIGF VGLMAPHISR RLVGSLYGAL 300
  301 LPVAAIVGAI LVLAADLIGR TVFTPLEIPA GVFTSAIGAP YFIYLLYKSR NS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.045757
Match:	2nq2A
Description:	No description for 2nq2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits