YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262354, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	372 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262354, gi|....

Description	E-value	Query Range	Subject Range
gi\|69275084, gi\|... - gi\|69275084\|ref\|ZP_00610996.1\| Citrate synthase I [Mesorhizobium sp. BNC1], gi\|68193524\|gb\|EAN08176....	0.0	[2..370]	[38..424]
gi\|67156800, gi\|... - gi\|67156800\|ref\|ZP_00418297.1\| Citrate synthase I [Azotobacter vinelandii AvOP], gi\|67085989\|gb\|EAM0... gi\|67156800 - gi\|67156800\|ref\|ZP_00418297.1\| Citrate synthase I [Azotobacter vinelandii AvOP]	0.0	[2..371]	[38..423]
gi\|13470829, gi\|... - gi\|14021572\|dbj\|BAB48184.1\| citrate synthase [Mesorhizobium loti MAFF303099], gi\|13470829\|ref\|NP_102...	0.0	[2..370]	[42..428]
CISY2_RHITR - Citrate synthase, plasmid OS=Rhizobium tropici GN=pcsA PE=3 SV=1	0.0	[2..370]	[38..424]
gi\|26245393 - gi\|26245393\|gb\|AAN77499.1\| citrate synthase [Sinorhizobium fredii]	0.0	[2..370]	[38..424]
CISY_RHIME - Citrate synthase OS=Rhizobium meliloti GN=gltA PE=3 SV=2 CISY_RHIME - Citrate synthase OS=Rhizobium meliloti (strain 1021) GN=gltA PE=3 SV=2	0.0	[2..370]	[38..424]
gi\|113727596, gi... - gi\|150396363\|ref\|YP_001326830.1\| type II citrate synthase [Sinorhizobium medicae WSM419], gi\|1500278...	0.0	[2..370]	[38..424]
CISY_BARQU - Citrate synthase OS=Bartonella quintana GN=gltA PE=3 SV=3 CISY_BARQU - Citrate synthase OS=Bartonella quintana (strain Toulouse) GN=gltA PE=3 SV=3	0.0	[2..371]	[38..425]
CISY_BARHE - Citrate synthase OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=gltA PE=3 SV=... CISY_BARHE - Citrate synthase OS=Bartonella henselae GN=gltA PE=3 SV=1	0.0	[2..370]	[38..424]
gi\|83751255, gi\|... - gi\|83751255\|ref\|ZP_00947669.1\| COG0372: Citrate synthase [Bartonella bacilliformis KC583], gi\|121602...	0.0	[2..371]	[38..425]

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Predicted Domain #1

Region A:
Residues: [1-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAEEKFSPG LDGIVAAETK ISFLDTVKGE IVIQGYDLIE LSKTKEYLDI VHLLLEEHLP  60
   61 NEDEKATLEK KLKEEYAVPE GVFNVLKALP KETHPMDGLR TGVSALAGYD NDIENRSLEV 120
  121 NKSRGYKLLS KVPNIVANSY HILNNEEPIE PLKELSYSAN FFYMLTGKKP TELEEKIFDR 180
  181 SLVLYSEHEM PNSTFTARVI ASTQSDLYGA LTGAVASLKG SLHGGANEAV MYMLLEAGNV 240
  241 EKFEELLQKK LYNKEKIMGF GHRVYMKKMD PRALMMKEAL KQLCDVKGDY TLYEMCEAGE 300
  301 KIMEKEKGIY PNLDYYAAPV YWMLGIPIQL YTPIFFSSRT VGLCAHVIEQ HTNNRLFRPR 360
  361 VNYIGERHVL SK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	1vgpA
Description:	Crystal Structure of an Isozyme of Citrate Synthase from Sulfolbus tokodaii strain7
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits