YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260788, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	368 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260788, gi|....

Description	E-value	Query Range	Subject Range
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	5.0E-63	[2..355]	[971..1376]
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	3.0E-62	[2..355]	[2475..2855]
gi\|116181860, gi... - gi\|88185855\|gb\|EAQ93323.1\| hypothetical protein CHGG_01558 [Chaetomium globosum CBS 148.51], gi\|1161...	2.0E-55	[4..367]	[109..504]
gi\|46115126, gi\|... - gi\|46115126\|ref\|XP_383581.1\| hypothetical protein FG03405.1 [Gibberella zeae PH-1], gi\|42548380\|gb\|E...	4.0E-55	[2..368]	[32..435]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	1.0E-54	[4..365]	[78..471]
gi\|47221082 - gi\|47221082\|emb\|CAG12776.1\| unnamed protein product [Tetraodon nigroviridis]	3.0E-54	[2..355]	[19..425]
gi\|194564792, gi... - gi\|84360233\|ref\|ZP_00984945.1\| COG1113: Gamma-aminobutyrate permease and related permeases [Burkhold...	3.0E-53	[6..361]	[35..416]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	1.0E-52	[4..365]	[145..538]

Back

Predicted Domain #1

Region A:
Residues: [1-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNTQSKISL VQFTFFVIQC QIGVGILSLP NRLHPIAKGG GWISALIAGL AIQLIILLMW  60
   61 LFLKRFPDAD MYESVCMLFG NKFGKLLGFA YVFYFTLIGM TVMLNACNVI KVWVLQATPW 120
  121 YAILLLFTIA CCYIAYNTFK VIVRFYVMAS ILILPMALLI ALGFSRADFS YIFPITEAGW 180
  181 WNIIQASKET ITAMYGFEII LIAFPKVNGS SVAKLKAISI ANGFVTLFYT FTVWICFIVF 240
  241 SPKQIELIPE PVAYLLRSLH IGIIDRTDLL FIPIWMITVV ASIASYYCAA SIGIGHIFNL 300
  301 ANHKKAVPIV GIIAFSVALF IDTPEELKVI ATFTDKFTYI FIVVLPLLFL LYSVIRNKKG 360
  361 EQYVQKKS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.61
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits