YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260338, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	205 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260338, gi|....

Description	E-value	Query Range	Subject Range
gi\|29893957, gi\|... - gi\|30018417\|ref\|NP_830048.1\| spore germination protein GerD [Bacillus cereus ATCC 14579], gi\|2989395... gi\|228657857, gi... - gi\|229125665\|ref\|ZP_04254697.1\| Spore germination protein [Bacillus cereus BDRD-Cer4], gi\|228657857\|...	281.0	[0..1]	[205..1]
gi\|229009657, gi... - gi\|229009657\|ref\|ZP_04166883.1\| Spore germination protein [Bacillus mycoides DSM 2048], gi\|228751679... gi\|228618399, gi... - gi\|229165136\|ref\|ZP_04292931.1\| Spore germination protein [Bacillus cereus AH621], gi\|228618399\|gb\|E... gi\|228652369, gi... - gi\|229131156\|ref\|ZP_04260068.1\| Spore germination protein [Bacillus cereus BDRD-ST196], gi\|228652369... gi\|89153244, gi\|... - gi\|89208835\|ref\|ZP_01187319.1\| spore germination protein [Bacillus weihenstephanensis KBAB4], gi\|891...	281.0	[0..1]	[204..1]
gi\|228983403, gi... - gi\|228983403\|ref\|ZP_04143616.1\| Spore germination protein [Bacillus thuringiensis serovar tochigiens... gi\|229153926, gi... - gi\|229153926\|ref\|ZP_04282056.1\| Spore germination protein [Bacillus cereus ATCC 4342], gi\|228629607\|... gi\|47570260, gi\|... - gi\|47570260\|ref\|ZP_00240911.1\| spore germination protein GerD [Bacillus cereus G9241], gi\|47553084\|g...	280.0	[0..1]	[205..1]
gi\|75764114, gi\|... - gi\|75764114\|ref\|ZP_00743703.1\| Spore germination protein GerD [Bacillus thuringiensis serovar israel... gi\|218895283, gi... - gi\|218895283\|ref\|YP_002443694.1\| spore germination protein GerD [Bacillus cereus G9842], gi\|21854527... gi\|228898901, gi... - gi\|228898901\|ref\|ZP_04063183.1\| Spore germination protein [Bacillus thuringiensis IBL 4222], gi\|2288... gi\|228796506, gi... - gi\|228963248\|ref\|ZP_04124417.1\| Spore germination protein [Bacillus thuringiensis serovar sotto str.... gi\|228853760, gi... - gi\|228905945\|ref\|ZP_04069842.1\| Spore germination protein [Bacillus thuringiensis IBL 200], gi\|22885...	280.0	[0..1]	[205..1]
gi\|52145066, gi\|... - gi\|52145066\|ref\|YP_081758.1\| spore germination protein [Bacillus cereus E33L], gi\|51978535\|gb\|AAU200...	280.0	[0..1]	[205..1]
gi\|42779229, gi\|... - gi\|42779229\|ref\|NP_976476.1\| spore germination protein GerD [Bacillus cereus ATCC 10987], gi\|4273514...	280.0	[0..1]	[205..1]
gi\|228600997, gi... - gi\|229182542\|ref\|ZP_04309793.1\| Spore germination protein [Bacillus cereus BGSC 6E1], gi\|228600997\|g... gi\|228694118, gi... - gi\|229089279\|ref\|ZP_04220560.1\| Spore germination protein [Bacillus cereus Rock3-42], gi\|228694118\|g... gi\|65317593 - gi\|65317593\|ref\|ZP_00390552.1\| hypothetical protein Bant_01000764 [Bacillus anthracis str. A2012] gi\|228925401, gi... - gi\|228925401\|ref\|ZP_04088497.1\| Spore germination protein [Bacillus thuringiensis serovar pondicheri...	278.0	[0..4]	[205..1]
gi\|10172853, gi\|... - gi\|15612804\|ref\|NP_241107.1\| spore germination protein [Bacillus halodurans C-125], gi\|10172853\|dbj\|... gi\|25494777 - pir\|\|A83680 spore germination protein gerD [imported] - Bacillus halodurans (strain C-125)	247.0	[0..1]	[178..1]
GERD_BACSU - Spore germination protein GerD OS=Bacillus subtilis (strain 168) GN=gerD PE=2 SV=1 gi\|221321486 - gi\|221321486\|ref\|ZP_03602780.1\| germination response to L-alanine and to the combination of glucose,... GERD_BACSU - Spore germination protein gerD OS=Bacillus subtilis GN=gerD PE=2 SV=1 gi\|221312289 - gi\|221312289\|ref\|ZP_03594094.1\| germination response to L-alanine and to the combination of glucose,... gi\|221317223 - gi\|221317223\|ref\|ZP_03598517.1\| germination response to L-alanine and to the combination of glucose,...	239.0	[0..1]	[183..1]
gi\|89203688, gi\|... - gi\|89203688\|ref\|ZP_01182296.1\| spore germination protein [Bacillus cereus subsp. cytotoxis NVH 391-9...	226.0	[0..1]	[182..1]

Back

Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRMLLVLTS SFLFLVLVAC AQEKEAKSEL DYDQTKKMIV DILKTDQGKK AIQDVLTDEK  60
   61 MKQALILDET VVKKTIEDAM VSDKGQQFWE KLFKDPEFSS KFAKSMGKEQ TALMKTLLKD 120
  121 PEYQAGVIEI MKN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [134-205]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEVEKMMLQT MKSKEYRQYL QQVLTETAES PLFQAKMIDI ISKGVQKAEK SGSDKKEAGG  60
   61 EGGSQEGKKE QQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits