YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257184, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257184, gi|....

Description	E-value	Query Range	Subject Range
gi\|98660701 - gi\|98660701\|dbj\|GAA02123.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	9.0E-72	[2..230]	[104..332]
gi\|106766772, gi... - gi\|160880093\|ref\|YP_001559061.1\| two component transcriptional regulator [Clostridium phytofermentan...	7.0E-71	[1..230]	[1..228]
gi\|10175779, gi\|... - gi\|15615719\|ref\|NP_244023.1\| two-component response regulator involved in phosphate regulation [Baci... gi\|25300880 - pir\|\|E84044 two-component response regulator involved in phosphate regulation phoP [imported] - Baci...	2.0E-70	[1..231]	[1..234]
gi\|83588943, gi\|... - gi\|83588943\|ref\|YP_428952.1\| two component transcriptional regulator [Moorella thermoacetica ATCC 39...	1.0E-69	[3..230]	[5..228]
gi\|42780487, gi\|... - gi\|42780487\|ref\|NP_977734.1\| DNA-binding response regulator [Bacillus cereus ATCC 10987], gi\|4273640... gi\|222095033, gi... - gi\|222095033\|ref\|YP_002529093.1\| response regulator [Bacillus cereus Q1], gi\|221239091\|gb\|ACM11801.1... gi\|217068126, gi... - gi\|217958874\|ref\|YP_002337422.1\| DNA-binding response regulator [Bacillus cereus AH187], gi\|21706812... gi\|206977570, gi... - gi\|206977570\|ref\|ZP_03238464.1\| DNA-binding response regulator [Bacillus cereus H3081.97], gi\|206744...	2.0E-69	[1..230]	[1..222]
gi\|47556738, gi\|... - gi\|47566185\|ref\|ZP_00237213.1\| two-component response regulator [Bacillus cereus G9241], gi\|47556738...	3.0E-69	[1..230]	[1..222]
gi\|229181712, gi... - gi\|229181712\|ref\|ZP_04309035.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|218160803, gi... - gi\|218232846\|ref\|YP_002370241.1\| DNA-binding response regulator YycF [Bacillus cereus B4264], gi\|218... gi\|228629853, gi... - gi\|229153624\|ref\|ZP_04281801.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|228797964, gi... - gi\|228961729\|ref\|ZP_04123333.1\| Alkaline phosphatase synthesis transcriptional regulatory protein ph... gi\|206970303, gi... - gi\|206970303\|ref\|ZP_03231256.1\| DNA-binding response regulator YycF [Bacillus cereus AH1134], gi\|206... gi\|29899052, gi\|... - gi\|30023491\|ref\|NP_835122.1\| two-component response regulator yycF [Bacillus cereus ATCC 14579], gi\|...	5.0E-69	[1..230]	[2..230]
gi\|6687469 - gi\|6687469\|emb\|CAB64972.1\| VicR protein [Enterococcus faecalis]	5.0E-69	[3..230]	[51..278]
gi\|152026417, gi... - gi\|89201694\|ref\|ZP_01180431.1\| Response regulator receiver:Transcriptional regulatory protein, C-ter...	5.0E-69	[1..230]	[2..230]
gi\|52082613, gi\|... - gi\|52788011\|ref\|YP_093840.1\| YycF [Bacillus licheniformis ATCC 14580], gi\|52350513\|gb\|AAU43147.1\| Yy...	6.0E-69	[1..230]	[1..230]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKNILIIDD DKEIVELLAV YLRNEGYNIY KAYDGDEALQ MISTYEVDLM ILDIMMPKRN  60
   61 GLEVCQEVRE NNTVPILMLS AKAEDMDKIL GLMTGADDYM IKPFNPLELV ARVKALLRRS 120
  121 SFQNASSPKN EDGMIRIRSA EIHKHNHTVK VNGEYIKLTS IEFDILYLLA SNTGRVFSSE 180
  181 EIFERVWNED GYGSNKTVMV HISNLRDKLE TGMNGEKFIH TVWGVGYKIE K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.522879
Match:	2oqrA
Description:	No description for 2oqrA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits