YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255156, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	514 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255156, gi|....

Description	E-value	Query Range	Subject Range
gi\|89200595, gi\|... - gi\|89200595\|ref\|ZP_01179347.1\| Phospholipase D/Transphosphatidylase [Bacillus cereus subsp. cytotoxi...	0.0	[1..514]	[1..514]
gi\|51977608, gi\|... - gi\|52144139\|ref\|YP_082689.1\| cardiolipin synthetase [Bacillus cereus E33L], gi\|51977608\|gb\|AAU19158....	0.0	[1..514]	[1..514]
gi\|228899875, gi... - gi\|228899875\|ref\|ZP_04064120.1\| Cardiolipin synthetase 2 [Bacillus thuringiensis IBL 4222], gi\|22885... gi\|75761253, gi\|... - gi\|75761253\|ref\|ZP_00741236.1\| Cardiolipin synthetase [Bacillus thuringiensis serovar israelensis AT... gi\|218896229, gi... - gi\|218896229\|ref\|YP_002444640.1\| cardiolipin synthetase [Bacillus cereus G9842], gi\|218545919\|gb\|ACK...	0.0	[1..514]	[1..514]
gi\|47554946, gi\|... - gi\|47568398\|ref\|ZP_00239099.1\| cardiolipin synthetase [Bacillus cereus G9241], gi\|47554946\|gb\|EAL132...	0.0	[1..514]	[1..514]
gi\|228802159, gi... - gi\|228957567\|ref\|ZP_04119319.1\| Cardiolipin synthetase 2 [Bacillus thuringiensis serovar pakistani s... gi\|228726282, gi... - gi\|229043041\|ref\|ZP_04190771.1\| Cardiolipin synthetase 2 [Bacillus cereus AH676], gi\|228726282\|gb\|EE... gi\|228639565, gi... - gi\|229143904\|ref\|ZP_04272322.1\| Cardiolipin synthetase 2 [Bacillus cereus BDRD-ST24], gi\|228639565\|g... gi\|218235896, gi... - gi\|218235896\|ref\|YP_002365978.1\| cardiolipin synthetase [Bacillus cereus B4264], gi\|218163853\|gb\|ACK... gi\|228633971, gi... - gi\|229149498\|ref\|ZP_04277733.1\| Cardiolipin synthetase 2 [Bacillus cereus m1550], gi\|228633971\|gb\|EE... gi\|228674694, gi... - gi\|229108755\|ref\|ZP_04238363.1\| Cardiolipin synthetase 2 [Bacillus cereus Rock1-15], gi\|228674694\|gb... gi\|228656840, gi... - gi\|229126603\|ref\|ZP_04255616.1\| Cardiolipin synthetase 2 [Bacillus cereus BDRD-Cer4], gi\|228656840\|g... CLS2_BACCR - Cardiolipin synthase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIM...	0.0	[1..514]	[1..514]
gi\|163939093, gi... - gi\|89204583\|ref\|ZP_01183160.1\| Phospholipase D/Transphosphatidylase [Bacillus weihenstephanensis KBA...	0.0	[1..514]	[1..514]
CLS_BACHD - Cardiolipin synthase OS=Bacillus halodurans GN=cls PE=3 SV=1 CLS_BACHD - Cardiolipin synthase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 ...	0.0	[20..514]	[15..503]
CLS_GEOKA - Cardiolipin synthase OS=Geobacillus kaustophilus GN=cls PE=3 SV=1 CLS_GEOKA - Cardiolipin synthase OS=Geobacillus kaustophilus (strain HTA426) GN=cls PE=3 SV=1	0.0	[19..514]	[7..502]
CLS_BACPE - Cardiolipin synthase OS=Bacillus pseudofirmus (strain OF4) GN=cls PE=3 SV=1 CLS_BACPF - Cardiolipin synthase OS=Bacillus pseudofirmus GN=cls PE=3 SV=1 gi\|2952028 - gi\|2952028\|gb\|AAC05444.1\| cardiolipin synthase [Bacillus firmus]	1.0E-99	[1..514]	[1..503]
gi\|153184921, gi... - gi\|254900359\|ref\|ZP_05260283.1\| cardiolipin synthase [Listeria monocytogenes J0161], gi\|153184921\|re... CLS_LISMC - Cardiolipin synthase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=cls PE=3 SV=1 gi\|254831074, gi... - gi\|254831074\|ref\|ZP_05235729.1\| cardiolipin synthase [Listeria monocytogenes 10403S], gi\|153197191\|r... gi\|254825375 - gi\|254825375\|ref\|ZP_05230376.1\| cardiolipin synthase [Listeria monocytogenes FSL J1-194] gi\|127764490, gi... - gi\|254913402\|ref\|ZP_05263414.1\| cardiolipin synthase [Listeria monocytogenes J2818], gi\|153192162\|re... gi\|254853969 - gi\|254853969\|ref\|ZP_05243317.1\| cardiolipin synthase [Listeria monocytogenes FSL R2-503] gi\|153168611, gi... - gi\|153168611\|ref\|ZP_01928434.1\| cardiolipin synthetase [Listeria monocytogenes FSL N1-017], gi\|13372... gi\|254879171 - gi\|254879171\|ref\|ZP_05251881.1\| cardiolipin synthase [Listeria monocytogenes FSL J2-071] gi\|133729180, gi... - gi\|254828078\|ref\|ZP_05232765.1\| cardiolipin synthase [Listeria monocytogenes FSL N3-165], gi\|1531757... gi\|255025951 - gi\|255025951\|ref\|ZP_05297937.1\| cardiolipin synthase [Listeria monocytogenes FSL J2-003] CLS_LISMO - Cardiolipin synthase OS=Listeria monocytogenes GN=cls PE=3 SV=1 gi\|153180597, gi... - gi\|254937783\|ref\|ZP_05269480.1\| cardiolipin synthase [Listeria monocytogenes F6900], gi\|153180597\|re... gi\|255520611 - gi\|255520611\|ref\|ZP_05387848.1\| cardiolipin synthase [Listeria monocytogenes FSL J1-175] gi\|254932256, gi... - gi\|254932256\|ref\|ZP_05265615.1\| cardiolipin synthase [Listeria monocytogenes HPB2262], gi\|153204089\|... gi\|224499858 - gi\|224499858\|ref\|ZP_03668207.1\| cardiolipin synthetase [Listeria monocytogenes Finland 1988] CLS_LISMC - Cardiolipin synthase OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=cls PE=3 SV=1 CLS_LISMF - Cardiolipin synthase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=cls PE=3 SV=1 gi\|224503256 - gi\|224503256\|ref\|ZP_03671563.1\| cardiolipin synthetase [Listeria monocytogenes FSL R2-561] CLS_LISMO - Cardiolipin synthase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=cls PE=... gi\|47015557, gi\|... - gi\|47096096\|ref\|ZP_00233697.1\| cardiolipin synthetase [Listeria monocytogenes str. 1/2a F6854], gi\|4... gi\|47092789, gi\|... - gi\|47092789\|ref\|ZP_00230574.1\| cardiolipin synthetase [Listeria monocytogenes str. 4b H7858], gi\|470...	2.0E-99	[52..514]	[15..482]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNTLKLIFF VLLLFALFVS LRMFIDVAFY SDVIGIKDVS ILGIISILFT VSAFLIGCVI  60
   61 FLENRHPSKT LTWLIVLGIF PVFGFFAYLL FG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [93-514]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNFRRKRMFQ KKALLDEQAF LQYKGHEDYE ERILRNHKHQ ELLFRLADRL GALNISFQTE  60
   61 TRTLTNGDET FQAILDGLKR AKHHIHMEYY IVRDDKLGTE IKDILIQKSK EGVVVRFLYD 120
  121 AVGSFKLSKS YIEELNDAGV EMIPFFPVRF PILNDKINYR NHRKIVIIDG NEGFVGGLNI 180
  181 GDEYLGKDKY FGFWRDTHLY LRGEAVQSLQ LIFLQDWFYM TGEAVLAPEY LQAKAVEGEH 240
  241 WGGVQLVAGG PDNKWETIKH LYFAMIASAR KSIWIATPYF IPDDDILSAL KVAALAGIDV 300
  301 RLLMPSKPDK RTVFYASRSY FPELLDAGVK IYEYEKGFLH SKVVIVDSDL ASIGTANMDM 360
  361 RSFHLNFEVN AFLYDTDSIR KLVQDFKDDL EESSEIHVDR FHKRRLHRRI VESTYRLLSP 420
  421 LL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.154902
Match:	1xdoA
Description:	Crystal Structure of Escherichia coli Polyphosphate Kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.66280208217584	bayes_pls_golite062009
phosphoric diester hydrolase activity	1.06227220880142	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.27587835691419	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: