YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263890, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	365 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263890, gi|....

Description	E-value	Query Range	Subject Range
gi\|47553844, gi\|... - gi\|47569515\|ref\|ZP_00240195.1\| carbamoyl-phosphate synthase, small subunit [Bacillus cereus G9241], ...	0.0	[1..365]	[1..365]
CARA_BACC1 - Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=carA PE... gi\|206745056, gi... - gi\|206976746\|ref\|ZP_03237650.1\| carbamoyl-phosphate synthase, small subunit [Bacillus cereus H3081.9... gi\|222097333, gi... - gi\|222097333\|ref\|YP_002531390.1\| carbamoyl-phosphate synthase, small subunit [Bacillus cereus Q1], g... gi\|217067034, gi... - gi\|217961308\|ref\|YP_002339876.1\| carbamoyl-phosphate synthase, small subunit [Bacillus cereus AH187]...	0.0	[1..365]	[1..365]
CARA_BACCR - Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 /...	0.0	[1..365]	[1..365]
gi\|152025000, gi... - gi\|89203182\|ref\|ZP_01181876.1\| Carbamoyl-phosphate synthase, small subunit [Bacillus cereus subsp. c...	0.0	[1..365]	[9..373]
gi\|254756680 - gi\|254756680\|ref\|ZP_05208709.1\| carbamoyl phosphate synthase small subunit [Bacillus anthracis str. ... gi\|118418333, gi... - gi\|118479108\|ref\|YP_896259.1\| carbamoyl phosphate synthase small subunit [Bacillus thuringiensis str... gi\|65321215 - gi\|65321215\|ref\|ZP_00394174.1\| COG0505: Carbamoylphosphate synthase small subunit [Bacillus anthraci...	0.0	[1..365]	[9..373]
CARA_BACCZ - Carbamoyl-phosphate synthase small chain OS=Bacillus cereus (strain ZK / E33L) GN=carA PE=3 SV=1	0.0	[1..365]	[1..365]
CARA_PELCD - Carbamoyl-phosphate synthase small chain OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=...	0.0	[1..358]	[1..375]
gi\|56379528, gi\|... - gi\|56419686\|ref\|YP_147004.1\| carbamoyl phosphate synthase small subunit [Geobacillus kaustophilus HT...	0.0	[1..361]	[1..362]
gi\|125973467, gi... - gi\|67876355\|ref\|ZP_00505242.1\| Carbamoyl-phosphate synthase, small subunit [Clostridium thermocellum... gi\|196253635, gi... - gi\|196253635\|ref\|ZP_03152253.1\| carbamoyl-phosphate synthase, small subunit [Clostridium thermocellu...	0.0	[1..356]	[1..357]

Back

Predicted Domain #1

Region A:
Residues: [1-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQLILEDG TVLIGTGFGG EIEKSGEVVF TTGMTGYQET LSDPSYCGQI VTFTYPLIGN  60
   61 YGINRDDFES IHPSVNGLIV NEICDHPSNF RNEISLNDYL KERNIPGLAG IDTRKLTRKI 120
  121 RQYGTLRGRL CNMDADVEYI VSQLKATVFT DHVKRVSTKD PYPSPGRGHR VVLVDFGMKH 180
  181 GILRELNKRD CDVIVVPYNT TAEEILRLSP DGIMLSNGPG DPKDVPEAIE MLKDIIGKVP 240
  241 LFGICLGHQL FALASGANTS KLKFGHRGLN HPVKNIATGK VAITSQNHGY AVEEESVENT 300
  301 ELEITHVALN DGTVEGLRHK KFPAFTVQYH PEASAGPEDA NDLFEDFLTM IENFKKEGEE 360
  361 LCQNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	1bxrB
Description:	Carbamoyl phosphate synthetase, small subunit N-terminal domain; Carbamoyl phosphate synthetase, small subunit C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	11.6556846811261	bayes_pls_golite062009
carbamoyl-phosphate synthase activity	11.614541080865	bayes_pls_golite062009
carbon-nitrogen ligase activity, with glutamine as amido-N-donor	8.83104490344765	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	6.7523653122648	bayes_pls_golite062009
anthranilate synthase activity	2.51214170411838	bayes_pls_golite062009
phosphoribosylformylglycinamidine synthase activity	1.51568729563523	bayes_pls_golite062009
ligase activity	1.45023593909062	bayes_pls_golite062009
oxo-acid-lyase activity	1.35896725827905	bayes_pls_golite062009
catalytic activity	0.902495165806215	bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity	0.270391651600004	bayes_pls_golite062009
nucleic acid binding	0.12569720972861	bayes_pls_golite062009
carbon-carbon lyase activity	0.0769356405014503	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: