YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253838, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253838, gi|....

Description	E-value	Query Range	Subject Range
gi\|85694914, gi\|... - gi\|85711413\|ref\|ZP_01042472.1\| Folate-dependent phosphoribosylglycinamide formyltransferase [Idiomar...	3.0E-60	[1..191]	[1..191]
gi\|88795665, gi\|... - gi\|88795665\|ref\|ZP_01111358.1\| phosphoribosylglycinamide formyltransferase [Alteromonas macleodii 'D...	2.0E-59	[1..195]	[5..199]
gi\|77960046, gi\|... - gi\|77960046\|ref\|ZP_00823945.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	6.0E-59	[1..195]	[1..195]
gi\|229898970, gi... - gi\|229898970\|ref\|ZP_04514114.1\| phosphoribosylglycinamide formyltransferase 1 [Yersinia pestis biova... gi\|166960781, gi... - gi\|167421292\|ref\|ZP_02313045.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis biovar ... gi\|167398688, gi... - gi\|167398688\|ref\|ZP_02304212.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis biovar ... gi\|167467157 - gi\|167467157\|ref\|ZP_02331861.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis FV-1] gi\|167424704, gi... - gi\|167424704\|ref\|ZP_02316457.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis biovar ... gi\|186699229, gi... - gi\|186896203\|ref\|YP_001873315.1\| phosphoribosylglycinamide formyltransferase [Yersinia pseudotubercu... gi\|170023592, gi... - gi\|170023592\|ref\|YP_001720097.1\| phosphoribosylglycinamide formyltransferase [Yersinia pseudotubercu... gi\|25528242 - pir\|\|AG0344 probable phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) [imported] - Yersinia ... gi\|45442471, gi\|... - gi\|45442471\|ref\|NP_994010.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis biovar Mic... gi\|162351086, gi... - gi\|77636346\|ref\|ZP_00798421.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase... gi\|149365294, gi... - gi\|149365294\|ref\|ZP_01887329.1\| putative phosphoribosylglycinamide formyltransferase [Yersinia pesti... gi\|21958181, gi\|... - gi\|22125304\|ref\|NP_668727.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis KIM], gi\|2... gi\|117672935, gi... - gi\|77629839\|ref\|ZP_00792425.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase... gi\|145211149, gi... - gi\|145599453\|ref\|YP_001163529.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis Pestoi... gi\|165926025, gi... - gi\|165926025\|ref\|ZP_02221857.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis biovar ... gi\|16123026, gi\|... - gi\|218929894\|ref\|YP_002347769.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis CO92],... gi\|166206413, gi... - gi\|166212482\|ref\|ZP_02238517.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis biovar ... gi\|165992570, gi... - gi\|166008188\|ref\|ZP_02229086.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis biovar ... gi\|229681662, gi... - gi\|229901733\|ref\|ZP_04516855.1\| phosphoribosylglycinamide formyltransferase 1 [Yersinia pestis Nepal... gi\|165937014, gi... - gi\|89104925\|ref\|ZP_01177455.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase... gi\|229838403, gi... - gi\|229838403\|ref\|ZP_04458562.1\| phosphoribosylglycinamide formyltransferase 1 [Yersinia pestis biova... gi\|108780173, gi... - gi\|108808260\|ref\|YP_652176.1\| phosphoribosylglycinamide formyltransferase [Yersinia pestis Antiqua],... gi\|229701546, gi... - gi\|229895391\|ref\|ZP_04510563.1\| phosphoribosylglycinamide formyltransferase 1 [Yersinia pestis Pesto...	8.0E-59	[1..195]	[1..195]
gi\|51597112, gi\|... - gi\|51597112\|ref\|YP_071303.1\| phosphoribosylglycinamide formyltransferase [Yersinia pseudotuberculosi... Q668E4\|Q668E4_YERPS - Putative phosphoribosylglycinamide formyltransferase - Yersinia pseudotuberculosis	1.0E-58	[1..195]	[1..195]
gi\|77958968 - gi\|77958968\|ref\|ZP_00822993.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	3.0E-58	[1..191]	[2..192]
gi\|89080493, gi\|... - gi\|89095239\|ref\|ZP_01168161.1\| phosphoribosylglycinamide formyltransferase [Oceanospirillum sp. MED9...	5.0E-58	[2..195]	[3..196]
gi\|37199449, gi\|... - gi\|37680700\|ref\|NP_935309.1\| phosphoribosylglycinamide formyltransferase [Vibrio vulnificus YJ016], ...	9.0E-58	[1..193]	[13..205]
gi\|77977642, gi\|... - gi\|77977642\|ref\|ZP_00833085.1\| COG0299: Folate-dependent phosphoribosylglycinamide formyltransferase...	9.0E-58	[1..195]	[1..195]
gi\|27365245, gi\|... - gi\|27365245\|ref\|NP_760773.1\| phosphoribosylglycinamide formyltransferase [Vibrio vulnificus CMCP6], ...	1.0E-57	[1..193]	[1..193]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLAVFASG SGSNFQSLVN AVEEKRLDAE ISLLVCDKPE ARAVGRANYH HIPCFAFSAK  60
   61 AYESKEAFEK EILNKLEEYE IDYVILAGYM RLIGPTLLEA YGGRIINIHP SLLPSFPGKD 120
  121 AVGQALEAGV KVTGVTIHYV DAGMDTGPII AQEAVVVSEG DTRESLQKKI QQVEHKLYVN 180
  181 TVNQIVQSTK EPTVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.39794
Match:	1zlxA
Description:	The apo structure of human glycinamide ribonucleotide transformylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.09881190860822	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01667310557403	bayes_pls_golite062009
hydroxymethyl-, formyl- and related transferase activity	3.81159871979977	bayes_pls_golite062009
glycine hydroxymethyltransferase activity	3.49010887242285	bayes_pls_golite062009
phosphoribosylglycinamide formyltransferase activity	2.94311083909314	bayes_pls_golite062009
methionyl-tRNA formyltransferase activity	2.39150724300118	bayes_pls_golite062009
catalytic activity	2.16003793103722	bayes_pls_golite062009
binding	1.1813924954238	bayes_pls_golite062009
transferase activity	1.01502594768782	bayes_pls_golite062009
ligase activity	0.922788719307786	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: