YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253910, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	729 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253910, gi|....

Description	E-value	Query Range	Subject Range
TOP3_BACCR - DNA topoisomerase 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9... gi\|228657525, gi... - gi\|229125867\|ref\|ZP_04254892.1\| DNA topoisomerase 3 [Bacillus cereus BDRD-Cer4], gi\|228657525\|gb\|EEL...	0.0	[1..729]	[1..729]
gi\|47567196, gi\|... - gi\|47567196\|ref\|ZP_00237910.1\| DNA topoisomerase I [Bacillus cereus G9241], gi\|47556039\|gb\|EAL14376....	0.0	[1..729]	[1..729]
TOP3_BACC1 - DNA topoisomerase 3 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=topB PE=3 SV=1	0.0	[1..729]	[1..729]
TOP3_BACCZ - DNA topoisomerase 3 OS=Bacillus cereus (strain ZK / E33L) GN=topB PE=3 SV=1	0.0	[1..729]	[1..729]
gi\|228899092, gi... - gi\|228899092\|ref\|ZP_04063364.1\| DNA topoisomerase 3 [Bacillus thuringiensis IBL 4222], gi\|228860533\|... gi\|74493329, gi\|... - gi\|75759167\|ref\|ZP_00739270.1\| DNA topoisomerase III [Bacillus thuringiensis serovar israelensis ATC...	0.0	[1..729]	[1..729]
gi\|163938366, gi... - gi\|89204726\|ref\|ZP_01183302.1\| DNA topoisomerase III [Bacillus weihenstephanensis KBAB4], gi\|8915735...	0.0	[1..729]	[1..729]
gi\|89200000, gi\|... - gi\|89200000\|ref\|ZP_01178756.1\| DNA topoisomerase III [Bacillus cereus subsp. cytotoxis NVH 391-98], ...	0.0	[1..729]	[1..729]
gi\|109648049, gi... - gi\|68206074\|ref\|ZP_00558268.1\| DNA topoisomerase III [Desulfitobacterium hafniense DCB-2], gi\|681700...	0.0	[1..728]	[1..727]
gi\|89897653, gi\|... - gi\|89897653\|ref\|YP_521140.1\| DNA topoisomerase III [Desulfitobacterium hafniense Y51], gi\|89337101\|d...	0.0	[1..728]	[1..727]
gi\|28202592, gi\|... - gi\|28210156\|ref\|NP_781100.1\| DNA topoisomerase III [Clostridium tetani E88], gi\|28202592\|gb\|AAO35037...	0.0	[1..728]	[1..729]

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Predicted Domain #1

Region A:
Residues: [1-627]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSVVIAEK PSVARDIARV LKCDKKGNGY LEGSKYIVTW ALGHLVTLAD PESYDVKYKK  60
   61 WNLEDLPMLP ERLKLTVIKQ TGKQFNAVKS QLLRKDVNEI IVATDAGREG ELVARWIIDK 120
  121 VRINKPIKRL WISSVTDKAI KDGFANLKPG KAYDNLYASA VARSEADWYI GLNATRALTT 180
  181 RFNAQLNCGR VQTPTVAMIA NREDEIKNFK AQTYYGIEAQ TTNQLKLTWQ DANGNSRSFN 240
  241 KEKIDGIVKG LDKHNATVLE IDKKQKKSFS PGLYDLTELQ RDANKKFGYS AKETLNIMQK 300
  301 LYEQHKVLTY PRTDSRYISS DIVGTLPERL KACGVGEYRP LAHKVLQKPI KANKSFVDDS 360
  361 KVSDHHAIIP TEGYVNFSAF TDKERKIYDL VVKRFLAVLF PAFEYEQLTL RTKVGNETFI 420
  421 ARGKTILHAG WKEVYENRFE DDDVTDDVKE QLLPRIEKGD TLTVKLIMQT SGQTKAPARF 480
  481 NEATLLSAME NPTKYMDTQN KQLADTLKST GGLGTVATRA DIIDKLFNSF LIEKRGKDIH 540
  541 ITSKGRQLLD LVPEELKSPT LTGEWEQKLE AIAKGKLKKE VFISEMKNYT KEIVSEIKSS 600
  601 DKKYKHDNIS TKSCPDCGKP MLEVNGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	175.0
Match:	2o19A
Description:	No description for 2o19A was found.

Predicted Domain #2

Region A:
Residues: [628-729]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGKMLVCQDR ECGHRKNVSR TTNARCPQCK KKLELRGEGA GQIFACKCGY REKLSTFQER  60
   61 RKKESGNKAD KRDVQKYMKQ QKKEEEPLNN PFAEALKKLK FD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits