YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264300, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	366 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264300, gi|....

Description	E-value	Query Range	Subject Range
gi\|228648434, gi... - gi\|229135049\|ref\|ZP_04263854.1\| Aminomethyltransferase [Bacillus cereus BDRD-ST196], gi\|228648434\|gb... gi\|229013446, gi... - gi\|229013446\|ref\|ZP_04170583.1\| Aminomethyltransferase [Bacillus mycoides DSM 2048], gi\|228747858\|gb... GCST_BACWK - Aminomethyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvT PE=3 SV=1	0.0	[1..366]	[1..366]
GCST_THETN - Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1 GCST_CALS4 - Aminomethyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM... gi\|214035115, gi... - gi\|254478933\|ref\|ZP_05092294.1\| glycine cleavage system T protein [Carboxydibrachium pacificum DSM 1...	0.0	[4..358]	[10..364]
gi\|47555460, gi\|... - gi\|47567783\|ref\|ZP_00238491.1\| glycine cleavage system T protein [Bacillus cereus G9241], gi\|4755546...	0.0	[1..366]	[1..366]
gi\|195992402, gi... - gi\|196034863\|ref\|ZP_03102270.1\| glycine cleavage system T protein [Bacillus cereus W], gi\|195992402\|... GCST_BACCZ - Aminomethyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=gcvT PE=3 SV=1	0.0	[1..366]	[1..366]
gi\|229140961, gi... - gi\|229140961\|ref\|ZP_04269505.1\| Aminomethyltransferase [Bacillus cereus BDRD-ST26], gi\|228642537\|gb\|... GCST_BACCQ - Aminomethyltransferase OS=Bacillus cereus (strain Q1) GN=gcvT PE=3 SV=1 GCST_BACC1 - Aminomethyltransferase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=gcvT PE=3 SV=1 GCST_BACC7 - Aminomethyltransferase OS=Bacillus cereus (strain AH187) GN=gcvT PE=3 SV=1	0.0	[1..366]	[1..366]
GCST_BACCN - Aminomethyltransferase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98)...	0.0	[1..366]	[1..366]
gi\|89086066, gi\|... - gi\|89099220\|ref\|ZP_01172098.1\| aminomethyltransferase [Bacillus sp. NRRL B-14911], gi\|89086066\|gb\|EA...	0.0	[1..366]	[1..367]
GCST_BACHD - Aminomethyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 915... GCST_BACHD - Aminomethyltransferase OS=Bacillus halodurans GN=gcvT PE=3 SV=1	0.0	[1..365]	[1..364]
GCST_THEP3 - Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3... gi\|241885038, gi... - gi\|241902576\|ref\|ZP_04787309.1\| glycine cleavage system T protein [Thermoanaerobacter brockii subsp....	0.0	[1..356]	[1..356]
GCST_THEPX - Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1 gi\|242256016, gi... - gi\|242256016\|ref\|ZP_04800914.1\| glycine cleavage system T protein [Thermoanaerobacter sp. X513], gi\|...	0.0	[1..356]	[1..356]

Back

Predicted Domain #1

Region A:
Residues: [1-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITLQRTPLF DVYAKYGGKT IDFGGWELPV QFSSIKEEHE AVRTAAGLFD VSHMGEVEVK  60
   61 GVDSLAFLQR VVTNDVSTLK VGGAQYTAMC YENGGTVDDL LIYKRGEEDY LLVINASNIE 120
  121 KDYEWLASHV IGDATVVNVS SEVAQLAIQG PKAEGILQKV VSEDLKEIKF FKFKNDILVD 180
  181 GIPALVSRTG YTGEDGFEIY CKSEDAAKLW EKLLEVGAEE GLKACGLGAR DTLRFEATLP 240
  241 LYGQELSKDI TPIEAGIGFA VKTNKEADFF GKATLKEQKE NGAPRKLVGI EVIERGIPRT 300
  301 HYPVFIGEEK IGEVTSGTQS PTLKKSIGLA LIDVKYAAVD TEVEIEIRNK RVKAVVVPTP 360
  361 FYKRSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	126.0
Match:	1yx2A
Description:	Crystal Structure of the Probable Aminomethyltransferase from Bacillus subtilis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits