YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264131, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264131, gi|....

Description	E-value	Query Range	Subject Range
gi\|16413414, gi\|... - pir\|\|AB1552 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) - Listeria innocua (strain Cli... gi\|16800024 - gi\|16800024\|ref\|NP_470292.1\| hypothetical protein lin0955 [Listeria innocua Clip11262]	2.0E-59	[1..374]	[1..374]
gi\|46880455, gi\|... - gi\|46907188\|ref\|YP_013577.1\| N-acetylglucosamine-6-phosphate deacetylase [Listeria monocytogenes str... gi\|47017065, gi\|... - gi\|47094557\|ref\|ZP_00232216.1\| N-acetylglucosamine-6-phosphate deacetylase [Listeria monocytogenes s... gi\|133735959, gi... - gi\|254931338\|ref\|ZP_05264697.1\| N-acetylglucosamine-6-phosphate deacetylase [Listeria monocytogenes ... gi\|226223574, gi... - gi\|226223574\|ref\|YP_002757681.1\| N-acetylglucosamine-6-phosphate deacetylase [Listeria monocytogenes...	3.0E-59	[1..374]	[1..374]
gi\|29897699, gi\|... - gi\|30022142\|ref\|NP_833773.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus cereus ATCC 14579...	1.0E-58	[1..380]	[1..380]
gi\|16410358, gi\|... - pir\|\|AD1194 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) - Listeria monocytogenes (stra... gi\|16802996 - gi\|16802996\|ref\|NP_464481.1\| hypothetical protein lmo0956 [Listeria monocytogenes EGD-e] gi\|224499492 - gi\|224499492\|ref\|ZP_03667841.1\| hypothetical protein LmonF1_07237 [Listeria monocytogenes Finland 19...	1.0E-58	[1..374]	[1..374]
gi\|255026771 - gi\|255026771\|ref\|ZP_05298757.1\| hypothetical protein LmonocytFSL_11309 [Listeria monocytogenes FSL J... gi\|254898871, gi... - gi\|254898871\|ref\|ZP_05258795.1\| hypothetical protein LmonJ_03620 [Listeria monocytogenes J0161], gi\|... gi\|127632957, gi... - gi\|254832299\|ref\|ZP_05236954.1\| hypothetical protein Lmon1_13174 [Listeria monocytogenes 10403S], gi... gi\|47096243, gi\|... - gi\|47096243\|ref\|ZP_00233841.1\| N-acetylglucosamine-6-phosphate deacetylase [Listeria monocytogenes s... gi\|254911640, gi... - gi\|254911640\|ref\|ZP_05261652.1\| hypothetical protein LmonJ2_02500 [Listeria monocytogenes J2818], gi... gi\|254935966, gi... - gi\|254935966\|ref\|ZP_05267663.1\| hypothetical protein LmonF6_02505 [Listeria monocytogenes F6900], gi...	2.0E-58	[1..374]	[1..374]
gi\|254758148 - gi\|254758148\|ref\|ZP_05210175.1\| N-acetylglucosamine 6-phosphate deacetylase [Bacillus anthracis str.... gi\|254744059 - gi\|254744059\|ref\|ZP_05201742.1\| N-acetylglucosamine 6-phosphate deacetylase [Bacillus anthracis str.... gi\|254736169 - gi\|254736169\|ref\|ZP_05193875.1\| N-acetylglucosamine 6-phosphate deacetylase [Bacillus anthracis str.... gi\|254683823 - gi\|254683823\|ref\|ZP_05147683.1\| N-acetylglucosamine 6-phosphate deacetylase [Bacillus anthracis str.... gi\|229198179, gi... - gi\|229198179\|ref\|ZP_04324888.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus cereus m1293],... gi\|118418484, gi... - gi\|118479259\|ref\|YP_896410.1\| N-acetylglucosamine 6-phosphate deacetylase [Bacillus thuringiensis st... gi\|228659713, gi... - gi\|229123578\|ref\|ZP_04252773.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus cereus 95/8201... gi\|229093113, gi... - gi\|229093113\|ref\|ZP_04224235.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus cereus Rock3-4... gi\|228772475, gi... - gi\|228987246\|ref\|ZP_04147367.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus thuringiensis ... gi\|228811762, gi... - gi\|228947775\|ref\|ZP_04110062.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus thuringiensis ... gi\|228824303, gi... - gi\|228935375\|ref\|ZP_04098195.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus thuringiensis ... gi\|228830394, gi... - gi\|228929104\|ref\|ZP_04092131.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus thuringiensis ... gi\|228842882, gi... - gi\|228916695\|ref\|ZP_04080260.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus thuringiensis ... gi\|167633730, gi... - gi\|167633730\|ref\|ZP_02392054.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus anthracis str.... gi\|177652611, gi... - gi\|177652611\|ref\|ZP_02935027.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus anthracis str.... gi\|21402109, gi\|... - gi\|65321448\|ref\|ZP_00394407.1\| COG1820: N-acetylglucosamine-6-phosphate deacetylase [Bacillus anthra...	3.0E-58	[1..380]	[3..382]
gi\|52141438, gi\|... - gi\|52141438\|ref\|YP_085392.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus cereus E33L], gi\|...	4.0E-58	[1..380]	[1..380]
gi\|42739097, gi\|... - gi\|42783169\|ref\|NP_980416.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus cereus ATCC 10987...	4.0E-58	[1..380]	[1..380]
gi\|89202898, gi\|... - gi\|89202898\|ref\|ZP_01181603.1\| N-acetylglucosamine-6-phosphate deacetylase [Bacillus cereus subsp. c...	5.0E-57	[1..380]	[3..382]
gi\|20806755 - gi\|20806755\|ref\|NP_621926.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter tengcon... gi\|223490117, gi... - gi\|254478128\|ref\|ZP_05091511.1\| N-acetylglucosamine-6-phosphate deacetylase [Carboxydibrachium pacif... gi\|20806755, gi\|... - gi\|20806755\|ref\|NP_621926.1\| N-acetylglucosamine-6-phosphate deacetylase [Thermoanaerobacter tengcon...	7.0E-57	[2..380]	[8..390]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTQVVINAK IYTGQEVVEN GFIRYAETIK EIGLMAQYVS QENETVLDAA GKIVIPGMID  60
   61 VHIHGGYDID AMDANSDGLV TLGKEMLKEG VTTYFPTTMT QAPEAIEAAL HAAKEAKEKG 120
  121 AHFEYIHLEG PYVSKKRAGA QPLEHIVPAN IEQFKQWQEA SGNLIKLVTY APEEEGALEF 180
  181 EQYLAETGVV GTMGHTDAID AQLKNRNITH ATHLYNQMRG LHHREPGVVG HVLLNPDVMV 240
  241 EVITDGIHIH PDMVKLAYKL KGPKKVSVIT DAMRAKGLED GLYELGGQPV HVKDGSARLE 300
  301 DGTLAGSILK MDQAFRNVIE FTGCSIEDAV LMTSVNQAEE FGLNNKGALA VGKDADFVVM 360
  361 NEDLHVYDTV RLGIHMKEGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1un7A
Description:	The 3-D structure of the N-acetylglucosamine-6-phosphate deacetylse, NagA, from Bacillus subtilis: a member of the urease superfamily
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.072432847481	bayes_pls_golite062009
hydrolase activity	2.06578679075873	bayes_pls_golite062009
deaminase activity	1.96372891812681	bayes_pls_golite062009
N-acetylglucosamine-6-phosphate deacetylase activity	1.94872453259298	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	0.481958484200481	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	0.0337217238364798	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: