YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264066, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	702 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264066, gi|....

Description	E-value	Query Range	Subject Range
gi\|17132726, gi\|... - gi\|17231085\|ref\|NP_487633.1\| polyphosphate kinase [Nostoc sp. PCC 7120], gi\|17132726\|dbj\|BAB75292.1\|... gi\|25345242 - pir\|\|AB2255 polyphosphate kinase [imported] - Nostoc sp. (strain PCC 7120)	0.0	[7..699]	[9..718]
gi\|75909372, gi\|... - gi\|75909372\|ref\|YP_323668.1\| polyphosphate kinase [Anabaena variabilis ATCC 29413], gi\|75703097\|gb\|A...	0.0	[7..699]	[9..718]
gi\|186685803, gi... - gi\|53688188\|ref\|ZP_00109608.2\| COG0855: Polyphosphate kinase [Nostoc punctiforme PCC 73102], gi\|1866...	0.0	[5..699]	[7..718]
gi\|67920515, gi\|... - gi\|67920515\|ref\|ZP_00514035.1\| Polyphosphate kinase [Crocosphaera watsonii WH 8501], gi\|67857999\|gb\|...	0.0	[5..700]	[7..720]
gi\|51974966, gi\|... - gi\|52141497\|ref\|YP_085332.1\| polyphosphate kinase [Bacillus cereus E33L], gi\|51974966\|gb\|AAU16516.1\|...	0.0	[1..702]	[1..702]
gi\|47565869, gi\|... - gi\|47565869\|ref\|ZP_00236908.1\| polyphosphate kinase [Bacillus cereus G9241], gi\|47557149\|gb\|EAL15478...	0.0	[1..702]	[1..702]
PPK_SYNY3 - Polyphosphate kinase OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=ppk PE=3 SV=1 PPK_SYNY3 - Polyphosphate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ppk PE=3 SV=1 gi\|7469833 - pir\|\|S76968 hypothetical protein - Synechocystis sp. (strain PCC 6803)	0.0	[3..699]	[5..719]
gi\|74492317, gi\|... - gi\|75760193\|ref\|ZP_00740250.1\| Polyphosphate kinase [Bacillus thuringiensis serovar israelensis ATCC...	0.0	[1..702]	[4..705]
gi\|42739018, gi\|... - gi\|42783090\|ref\|NP_980337.1\| polyphosphate kinase [Bacillus cereus ATCC 10987], gi\|42739018\|gb\|AAS42...	0.0	[5..702]	[3..700]
gi\|228636929, gi... - gi\|229146567\|ref\|ZP_04274937.1\| Polyphosphate kinase [Bacillus cereus BDRD-ST24], gi\|228636929\|gb\|EE... gi\|229129273, gi... - gi\|229129273\|ref\|ZP_04258245.1\| Polyphosphate kinase [Bacillus cereus BDRD-Cer4], gi\|228654199\|gb\|EE... PPK_BACCR - Polyphosphate kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB ...	0.0	[1..702]	[1..702]

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Predicted Domain #1

Region A:
Residues: [1-702]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSKGNIVN LNDTAYYNNR ELSWLAFNER VLQEAQDETN PLLERLKFIS IFSSNLDEFF  60
   61 MVRVAGLKDQ VSAGFNQPEN KAGLTPKKQL NKIAIKAHEL MTVQYGTFKN YVLPALELEG 120
  121 IERLTFHDLT KEQREFIEEY FDEQIFPVLT PVAIDAYRPF PMLLNKSLNL ATLLYDEKQV 180
  181 EEENRTKLGI VQVPSLLERF IFLPSEGQKH KFILLEDVIS SFTHKLFTGY KVSSVTRFRI 240
  241 TRNADLTIHE EGARDLLKVI EKELKKRKWG AAVRLEVGKE HIDERVLALL YEVLEVKDED 300
  301 VYIMDGPLDL TCLFSLYKKL APLYEHLVYP ALIPQRPQDL GDAEDVFEKA IEHDILLHHP 360
  361 FESFQPVVDF VRDAADDPNV LAIKQTLYRV SGDSPIIQAL KIAAEKGKQV TVLVELKARF 420
  421 DEENNVHWAK ELEQAGCHVI YGVSHLKTHS KITLVVRRKN GKIERFVHLG TGNYNDATAK 480
  481 LYTDFGYITS RKDFGVDATN FFNYLSGYTT KPHFHHLSVA PFDIREQFMD LIDEEIRYHR 540
  541 QYGNGYIIAK MNSLTDKPLI KKMYEASQAG VKVELIVRGT CCLRPGIPNV SENIRVVSVV 600
  601 GRYLEHSRIY YFHHNGEEKI YLSSADWMTR NMEKRVEISF PILDIEMKAR IKAILQLTLA 660
  661 DNVKTREQNK DGDYYYVINS GAEEIDSQVK LFKMAYQNTD AE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1xdoA
Description:	Crystal Structure of Escherichia coli Polyphosphate Kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
polyphosphate kinase activity	13.7847593568932	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	4.58273206368885	bayes_pls_golite062009
kinase activity	2.73303197279191	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.40455487067749	bayes_pls_golite062009
transferase activity	1.58515858118724	bayes_pls_golite062009
catalytic activity	1.29236214516383	bayes_pls_golite062009
binding	0.86210568043471	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.62416665753063	bayes_pls_golite062009
protein binding	0.361096900521699	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: