YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258496, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258496, gi|....

Description	E-value	Query Range	Subject Range
RNC_GEOKA - Ribonuclease 3 OS=Geobacillus kaustophilus (strain HTA426) GN=rnc PE=3 SV=1 RNC_GEOKA - Ribonuclease 3 OS=Geobacillus kaustophilus GN=rnc PE=3 SV=1	4.0E-66	[3..242]	[2..241]
RNC_BACCN - Ribonuclease 3 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=rnc ...	3.0E-65	[1..244]	[1..244]
gi\|229157425, gi... - gi\|229157425\|ref\|ZP_04285503.1\| Ribonuclease 3 [Bacillus cereus ATCC 4342], gi\|228626152\|gb\|EEK82901... gi\|228772770, gi... - gi\|228986992\|ref\|ZP_04147118.1\| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1... RNC_BACCQ - Ribonuclease 3 OS=Bacillus cereus (strain Q1) GN=rnc PE=3 SV=1 gi\|228585439, gi... - gi\|229197960\|ref\|ZP_04324674.1\| Ribonuclease 3 [Bacillus cereus m1293], gi\|228585439\|gb\|EEK43543.1\| ... gi\|47570283, gi\|... - gi\|47570283\|ref\|ZP_00240932.1\| ribonuclease III [Bacillus cereus G9241], gi\|47553047\|gb\|EAL11449.1\| ... gi\|206743285, gi... - gi\|206978506\|ref\|ZP_03239364.1\| ribonuclease III [Bacillus cereus H3081.97], gi\|206743285\|gb\|EDZ5473... RNC_BACC1 - Ribonuclease 3 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rnc PE=3 SV=1 RNC_BACC7 - Ribonuclease 3 OS=Bacillus cereus (strain AH187) GN=rnc PE=3 SV=1	3.0E-65	[1..245]	[1..245]
gi\|75762036, gi\|... - gi\|75762036\|ref\|ZP_00741948.1\| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC 356...	4.0E-65	[1..245]	[18..262]
gi\|89086647, gi\|... - gi\|89098685\|ref\|ZP_01171567.1\| Rnc [Bacillus sp. NRRL B-14911], gi\|89086647\|gb\|EAR65766.1\| Rnc [Baci...	4.0E-65	[3..245]	[5..246]
gi\|118418296, gi... - gi\|118479071\|ref\|YP_896222.1\| ribonuclease III [Bacillus thuringiensis str. Al Hakam], gi\|118418296\|... gi\|65321177 - gi\|65321177\|ref\|ZP_00394136.1\| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str. A2012]	4.0E-65	[1..245]	[18..262]
RNC_BACCZ - Ribonuclease 3 OS=Bacillus cereus (strain ZK / E33L) GN=rnc PE=3 SV=1	5.0E-65	[1..245]	[1..245]
gi\|228922603, gi... - gi\|228922603\|ref\|ZP_04085903.1\| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC 4B... gi\|228805446, gi... - gi\|228954126\|ref\|ZP_04116154.1\| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str. T03a001... gi\|228857321, gi... - gi\|228902352\|ref\|ZP_04066509.1\| Ribonuclease 3 [Bacillus thuringiensis IBL 4222], gi\|228857321\|gb\|EE... gi\|228849963, gi... - gi\|228909674\|ref\|ZP_04073497.1\| Ribonuclease 3 [Bacillus thuringiensis IBL 200], gi\|228849963\|gb\|EEM... gi\|228980456, gi... - gi\|228980456\|ref\|ZP_04140766.1\| Ribonuclease 3 [Bacillus thuringiensis Bt407], gi\|228779276\|gb\|EEM27... gi\|229047536, gi... - gi\|229047536\|ref\|ZP_04193126.1\| Ribonuclease 3 [Bacillus cereus AH676], gi\|228723783\|gb\|EEL75138.1\| ... gi\|228799581, gi... - gi\|228960065\|ref\|ZP_04121729.1\| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str. T13001... gi\|228973866, gi... - gi\|228973866\|ref\|ZP_04134442.1\| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str. T0... gi\|229111320, gi... - gi\|229111320\|ref\|ZP_04240873.1\| Ribonuclease 3 [Bacillus cereus Rock1-15], gi\|228672096\|gb\|EEL27387.... gi\|228654362, gi... - gi\|229129125\|ref\|ZP_04258098.1\| Ribonuclease 3 [Bacillus cereus BDRD-Cer4], gi\|228654362\|gb\|EEL10227... gi\|229071347, gi... - gi\|229071347\|ref\|ZP_04204570.1\| Ribonuclease 3 [Bacillus cereus F65185], gi\|228711801\|gb\|EEL63753.1\|... gi\|229081104, gi... - gi\|229081104\|ref\|ZP_04213614.1\| Ribonuclease 3 [Bacillus cereus Rock4-2], gi\|228702148\|gb\|EEL54624.1... RNC_BACCR - Ribonuclease 3 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 /... gi\|206971258, gi... - gi\|206971258\|ref\|ZP_03232209.1\| ribonuclease III [Bacillus cereus AH1134], gi\|206734030\|gb\|EDZ51201.... gi\|229180125, gi... - gi\|229180125\|ref\|ZP_04307469.1\| Ribonuclease 3 [Bacillus cereus 172560W], gi\|228603334\|gb\|EEK60811.1... gi\|229192018, gi... - gi\|229192018\|ref\|ZP_04318988.1\| Ribonuclease 3 [Bacillus cereus ATCC 10876], gi\|228591569\|gb\|EEK4941... RNC_BACC2 - Ribonuclease 3 OS=Bacillus cereus (strain G9842) GN=rnc PE=3 SV=1 gi\|229146420, gi... - gi\|229146420\|ref\|ZP_04274791.1\| Ribonuclease 3 [Bacillus cereus BDRD-ST24], gi\|228637053\|gb\|EEK93512... RNC_BACC4 - Ribonuclease 3 OS=Bacillus cereus (strain B4264) GN=rnc PE=3 SV=1 gi\|229152048, gi... - gi\|229152048\|ref\|ZP_04280243.1\| Ribonuclease 3 [Bacillus cereus m1550], gi\|228631397\|gb\|EEK88031.1\| ...	6.0E-65	[1..245]	[1..245]
gi\|228748286, gi... - gi\|229013032\|ref\|ZP_04170197.1\| Ribonuclease 3 [Bacillus mycoides DSM 2048], gi\|228748286\|gb\|EEL9814... gi\|228648703, gi... - gi\|229134657\|ref\|ZP_04263466.1\| Ribonuclease 3 [Bacillus cereus BDRD-ST196], gi\|228648703\|gb\|EEL0472... RNC_BACWK - Ribonuclease 3 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rnc PE=3 SV=1	2.0E-64	[1..244]	[1..244]
RNC_BACHD - Ribonuclease 3 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-12... RNC_BACHD - Ribonuclease 3 OS=Bacillus halodurans GN=rnc PE=3 SV=1	3.0E-64	[4..244]	[20..260]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYRKYREKK YETKYREAFK LFQEKIGITF TDEKLLIQAF THSSYVNEHR KKPHEDNERL  60
   61 EFLGDAVLEL TVSQYLFQKY PTMSEGELTK LRAAIVCEPS LVRFANELSF GSLVLLGKGE 120
  121 EMTGGRERPA LLADVFEAFI GALYLDQGLE TVWGFLKEIV YPKINEGAFS HVMDYKSQLQ 180
  181 ELIQRDGSGN IEYQILQEKG PAHNREFVSR VTLNNVALGL GSGKSKKEAE QQAAAEALKK 240
  241 LKEQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	1o0wA
Description:	RNase III endonuclease catalytic domain; RNase III, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA binding	2.103878681691	bayes_pls_golite062009
endoribonuclease activity	2.02847548000256	bayes_pls_golite062009
endonuclease activity	1.52328576888271	bayes_pls_golite062009
binding	1.36306903445995	bayes_pls_golite062009
nucleic acid binding	1.33734225890407	bayes_pls_golite062009
double-stranded RNA binding	0.80785216315429	bayes_pls_golite062009
catalytic activity	0.328884095744829	bayes_pls_golite062009
protein binding	0.018276859224266	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: