YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262461, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262461, gi|....

Description	E-value	Query Range	Subject Range
PTJB_BACSU, PTCB... - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis GN=licB PE=1 SV=1, (P... PTJB_BACSU - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis (strain 168) GN=licB ... gi\|221321063 - gi\|221321063\|ref\|ZP_03602357.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221325348 - gi\|221325348\|ref\|ZP_03606642.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221316152 - gi\|221316152\|ref\|ZP_03597957.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...	2.0E-31	[1..99]	[1..98]
gi\|89086742, gi\|... - gi\|89098497\|ref\|ZP_01171380.1\| PTS system, cellobiose-specific IIB component [Bacillus sp. NRRL B-14...	3.0E-31	[1..100]	[20..118]
PTEB_GEOSE - Cellobiose-specific phosphotransferase enzyme IIB component OS=Geobacillus stearothermophilus GN=cel...	4.0E-31	[1..101]	[1..100]
gi\|29343058, gi\|... - gi\|29375597\|ref\|NP_814751.1\| PTS system, IIB component [Enterococcus faecalis V583], gi\|29343058\|gb\|... gi\|229305979, gi... - gi\|229548958\|ref\|ZP_04437683.1\| protein-N(pi)-phosphohistidine--sugar phosphotransferase [Enterococc... gi\|238831372, gi... - gi\|238855992\|ref\|ZP_04646274.1\| lichenan-specific phosphotransferase enzyme iib component [Enterococ...	1.0E-30	[3..100]	[6..104]
gi\|293571715\|ref... - lactose/cellobiose-specific phosphotransferase enzyme iib component [Enterococcus faecium E980] gi\|48826183 - ref\|ZP_00287408.1\| COG1440: Phosphotransferase system cellobiose-specific component IIB [Enterococcu... gi\|69244697, gi\|... - gi\|69244697\|ref\|ZP_00602961.1\| Phosphotransferase system, lactose/cellobiose-specific IIB subunit [E...	2.0E-30	[3..101]	[6..105]
gi\|46908544, gi\|... - gi\|46908544\|ref\|YP_014933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogenes ...	3.0E-30	[2..100]	[3..99]
gi\|52787766, gi\|... - gi\|52787766\|ref\|YP_093595.1\| LicB [Bacillus licheniformis ATCC 14580], gi\|52350268\|gb\|AAU42902.1\| Li...	4.0E-30	[1..99]	[1..98]
gi\|89150746, gi\|... - gi\|89201159\|ref\|ZP_01179905.1\| Phosphotransferase system, lactose/cellobiose-specific IIB subunit [B...	4.0E-30	[1..101]	[1..100]

Back

Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLFVCSGG MSSAIVVNAL KKEAEKKGVN MEVHAIGTSE VEEEVKNGWD VVMVAPQVRH  60
   61 RFDSVKKFAE EESIPCGIIP PQAYTPLGGP TLLKTVNDLI R

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1h9cA
Description:	Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.08041453921791	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.49138214292642	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.86370685509666	bayes_pls_golite062009
sugar transmembrane transporter activity	1.77053981674308	bayes_pls_golite062009
transporter activity	1.6837050020547	bayes_pls_golite062009
transmembrane transporter activity	1.5685227361887	bayes_pls_golite062009
substrate-specific transporter activity	1.32293422112884	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.217268678967	bayes_pls_golite062009
active transmembrane transporter activity	1.12964417923438	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	0.71593290802554	bayes_pls_golite062009
catalytic activity	0.676259875978821	bayes_pls_golite062009
binding	0.472595683811139	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.37663629577414	bayes_pls_golite062009
fructose transmembrane transporter activity	0.225562559709031	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0296784994545702	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: