YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257076, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257076, gi|....

Description	E-value	Query Range	Subject Range
gi\|52143043, gi\|... - gi\|52143043\|ref\|YP_083786.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus E33L], gi\|51976512\|...	3.0E-59	[1..245]	[1..245]
gi\|21400317, gi\|... - gi\|65319739\|ref\|ZP_00392698.1\| COG0860: N-acetylmuramoyl-L-alanine amidase [Bacillus anthracis str. ...	3.0E-59	[1..245]	[1..245]
gi\|47570139, gi\|... - gi\|47570139\|ref\|ZP_00240796.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus cereus G9241], gi\|475532...	3.0E-59	[1..245]	[1..245]
gi\|2126822, gi\|4... - gi\|493489\|emb\|CAA42675.1\| bacteriolytic enzyme [Bacillus sp.], pir\|\|S60600 bacteriolytic enzyme lytP...	3.0E-57	[1..240]	[1..248]
gi\|221318866 - gi\|221318866\|ref\|ZP_03600160.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili... gi\|221313943 - gi\|221313943\|ref\|ZP_03595748.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili... CWLC_BACSU - Sporulation-specific N-acetylmuramoyl-L-alanine amidase OS=Bacillus subtilis (strain 168) GN=cwlC PE... CWLC_BACSU - Sporulation-specific N-acetylmuramoyl-L-alanine amidase OS=Bacillus subtilis GN=cwlC PE=1 SV=1 gi\|221323138 - gi\|221323138\|ref\|ZP_03604432.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtili...	7.0E-57	[1..240]	[1..247]
gi\|25350405 - pir\|\|F83811 N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrolase) cwlC [import... gi\|15613857, gi\|... - gi\|15613857\|ref\|NP_242160.1\| N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrol...	1.0E-56	[1..240]	[1..246]
BG10825\|CwlC\| - 255 aa - N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall) gi\|2634125, gi\|1... - gi\|2634125\|emb\|CAB13625.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus subtilis subsp. subtilis str...	1.0E-56	[1..240]	[1..247]
gi\|56962701, gi\|... - gi\|56962701\|ref\|YP_174427.1\| N-acetylmuramoyl-L-alanine amidase [Bacillus clausii KSM-K16], gi\|56908...	4.0E-56	[1..240]	[1..249]
gi\|52003563, gi\|... - gi\|52785731\|ref\|YP_091560.1\| CwlC [Bacillus licheniformis ATCC 14580], gi\|52348233\|gb\|AAU40867.1\| Cw...	3.0E-55	[1..240]	[1..246]

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Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARYSLHAGH NSIVQGANYG NRKEHIMDRQ VKDAVVAKLR ALGHTVYDDT DEVGTTQAQN  60
   61 LNNIVSKTNS HDVDLVVSFH LNSYDTRANG VEVLYYDQQA LSAKIAAQLS KDIGWSNRGA 120
  121 KERKDLYVLS NTKAPAILIE LGFIDNEADM AKWNPDKIAN SIVYALTGQS GGTTPPSKQN 180
  181 IIQSGAFSPY ETPDVMGALT SLKMTANFIL QSDGLTYFIS EPTSDAQLKG MTDYLDRRGW 240
  241 WYEVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1xovA
Description:	The crystal structure of the listeria monocytogenes bacteriophage PSA endolysin PlyPSA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits