YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262270, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262270, gi|....

Description	E-value	Query Range	Subject Range
gi\|30020344, gi\|... - gi\|30020344\|ref\|NP_831975.1\| NAD(P)H nitroreductase [Bacillus cereus ATCC 14579], gi\|29895895\|gb\|AAP... gi\|229044001, gi... - gi\|229044001\|ref\|ZP_04191691.1\| Nitroreductase [Bacillus cereus AH676], gi\|228725346\|gb\|EEL76613.1\| ... gi\|228638573, gi... - gi\|229144851\|ref\|ZP_04273248.1\| Nitroreductase [Bacillus cereus BDRD-ST24], gi\|228638573\|gb\|EEK95006... gi\|229127655, gi... - gi\|229127655\|ref\|ZP_04256644.1\| Nitroreductase [Bacillus cereus BDRD-Cer4], gi\|228655732\|gb\|EEL11581... gi\|228673739, gi... - gi\|229109698\|ref\|ZP_04239284.1\| Nitroreductase [Bacillus cereus Rock1-15], gi\|228673739\|gb\|EEL28997....	4.0E-45	[1..215]	[1..215]
gi\|52143199, gi\|... - gi\|52143199\|ref\|YP_083630.1\| nitroreductase family protein [Bacillus cereus E33L], gi\|51976668\|gb\|AA...	1.0E-44	[1..215]	[1..215]
gi\|163940049, gi... - gi\|89208511\|ref\|ZP_01187014.1\| Nitroreductase [Bacillus weihenstephanensis KBAB4], gi\|89153570\|gb\|EA...	4.0E-44	[1..215]	[1..215]
gi\|229155843, gi... - gi\|229155843\|ref\|ZP_04283944.1\| Nitroreductase [Bacillus cereus ATCC 4342], gi\|228627450\|gb\|EEK84176... gi\|47565613, gi\|... - gi\|47565613\|ref\|ZP_00236653.1\| nitroreductase family protein [Bacillus cereus G9241], gi\|47557249\|gb...	7.0E-44	[1..215]	[1..215]
gi\|42781350, gi\|... - gi\|42781350\|ref\|NP_978597.1\| nitroreductase family protein [Bacillus cereus ATCC 10987], gi\|42737272...	9.0E-44	[1..215]	[1..215]
gi\|89152143, gi\|... - gi\|89199868\|ref\|ZP_01178625.1\| Nitroreductase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|8915...	1.0E-41	[1..215]	[1..215]
gi\|228825463, gi... - gi\|228934295\|ref\|ZP_04097134.1\| Nitroreductase [Bacillus thuringiensis serovar andalousiensis BGSC 4... gi\|196032437, gi... - gi\|196032437\|ref\|ZP_03099851.1\| nitroreductase family protein [Bacillus cereus W], gi\|195995188\|gb\|E... gi\|49480049, gi\|... - gi\|49480049\|ref\|YP_037122.1\| NAD(P)H nitroreductase [Bacillus thuringiensis serovar konkukian str. 9...	1.0E-37	[2..213]	[6..211]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYEDFKEVI HGRRSVRKFK EQEVSTSDIK EIIDCARYAP SDTNSQTWEF LVIMNREKIK  60
   61 EIEQMTWDAL HKLAAKAAEN GEEKAGKLLT RSFGPYATAF SEAPVLIVCL ATPYESKFRE 120
  121 KIFDPIAFVP NSVWEEEGIK SSCLAAQNLM LAAHAKGLGT CPMTGPVLLA QNELRQYLQI 180
  181 EPEKQINMVI SLGFPKDKPK KLPRKEVDEI TTFVF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	1zchA
Description:	Structure of the hypothetical oxidoreductase YcnD from Bacillus subtilis
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.48193963005483	bayes_pls_golite062009
oxidoreductase activity	0.480695441264854	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: