YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256628, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256628, gi|....

Description	E-value	Query Range	Subject Range
gi\|167513731, gi... - gi\|167638430\|ref\|ZP_02396707.1\| transcription antiterminator, LytR family [Bacillus anthracis str. A... gi\|65319285 - gi\|65319285\|ref\|ZP_00392244.1\| COG1316: Transcriptional regulator [Bacillus anthracis str. A2012]	360.0	[0..1]	[333..3]
gi\|228599322, gi... - gi\|229184207\|ref\|ZP_04311416.1\| Transcriptional regulator, LytR [Bacillus cereus BGSC 6E1], gi\|22859... gi\|229121550, gi... - gi\|229121550\|ref\|ZP_04250777.1\| Transcriptional regulator, LytR [Bacillus cereus 95/8201], gi\|228662... gi\|228945614, gi... - gi\|228945614\|ref\|ZP_04107964.1\| Transcriptional regulator, LytR [Bacillus thuringiensis serovar mont... gi\|228927065, gi... - gi\|228927065\|ref\|ZP_04090130.1\| Transcriptional regulator, LytR [Bacillus thuringiensis serovar pond... gi\|51976916, gi\|... - gi\|52143447\|ref\|YP_083382.1\| LytR family transcriptional regulator [Bacillus cereus E33L], gi\|519769... gi\|118477425, gi... - gi\|118477425\|ref\|YP_894576.1\| LytR family transcriptional regulator [Bacillus thuringiensis str. Al ... gi\|228844912, gi... - gi\|228914593\|ref\|ZP_04078202.1\| Transcriptional regulator, LytR [Bacillus thuringiensis serovar puls...	360.0	[0..1]	[333..3]
gi\|47569831, gi\|... - gi\|47569831\|ref\|ZP_00240500.1\| transcriptional regulator, putative [Bacillus cereus G9241], gi\|47553... gi\|229155587, gi... - gi\|229155587\|ref\|ZP_04283695.1\| Transcriptional regulator, LytR [Bacillus cereus ATCC 4342], gi\|2286...	359.0	[0..1]	[333..3]
gi\|42737045, gi\|... - gi\|42781124\|ref\|NP_978371.1\| LytR family transcription antiterminator [Bacillus cereus ATCC 10987], ...	358.0	[0..1]	[333..1]
gi\|29895658, gi\|... - gi\|30020108\|ref\|NP_831739.1\| LytR family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|...	355.0	[0..1]	[333..3]
gi\|228651924, gi... - gi\|229131545\|ref\|ZP_04260432.1\| Transcriptional regulator, LytR [Bacillus cereus BDRD-ST196], gi\|228... gi\|228751165, gi... - gi\|229010032\|ref\|ZP_04167246.1\| Transcriptional regulator, LytR [Bacillus mycoides DSM 2048], gi\|228... gi\|163860726, gi... - gi\|89205970\|ref\|ZP_01184534.1\| Cell envelope-related transcriptional attenuator [Bacillus weihenstep...	347.0	[0..1]	[332..2]
gi\|152023106, gi... - gi\|89201538\|ref\|ZP_01180277.1\| Cell envelope-related transcriptional attenuator [Bacillus cereus sub...	340.0	[0..1]	[332..1]
gi\|228899292, gi... - gi\|228899292\|ref\|ZP_04063555.1\| Transcriptional regulator, LytR [Bacillus thuringiensis IBL 4222], g... gi\|74490623, gi\|... - gi\|75761889\|ref\|ZP_00741815.1\| Transcriptional regulator, LytR family [Bacillus thuringiensis serova...	336.0	[0..1]	[332..20]
gi\|16412006, gi\|... - pir\|\|AF1389 B. subtilis probable transcription regulator LytR homolog lmo2518 [imported] - Listeria ... gi\|224499872 - gi\|224499872\|ref\|ZP_03668221.1\| transcriptional regulator, putative [Listeria monocytogenes Finland ... gi\|224503241 - gi\|224503241\|ref\|ZP_03671548.1\| transcriptional regulator, putative [Listeria monocytogenes FSL R2-5... gi\|254900344, gi... - gi\|254900344\|ref\|ZP_05260268.1\| transcriptional regulator LytR [Listeria monocytogenes J0161], gi\|15... gi\|254831059, gi... - gi\|254831059\|ref\|ZP_05235714.1\| transcriptional regulator LytR [Listeria monocytogenes 10403S], gi\|1... gi\|254913417, gi... - gi\|254913417\|ref\|ZP_05263429.1\| transcriptional regulator LytR [Listeria monocytogenes J2818], gi\|15... gi\|254828093, gi... - gi\|254828093\|ref\|ZP_05232780.1\| transcriptional regulator LytR [Listeria monocytogenes FSL N3-165], ... gi\|153180608, gi... - gi\|254937798\|ref\|ZP_05269495.1\| transcriptional regulator LytR [Listeria monocytogenes F6900], gi\|15... gi\|255016748 - gi\|255016748\|ref\|ZP_05288874.1\| transcriptional regulator LytR [Listeria monocytogenes FSL F2-515] gi\|255025654 - gi\|255025654\|ref\|ZP_05297640.1\| transcriptional regulator LytR [Listeria monocytogenes FSL J2-003] gi\|255029637 - gi\|255029637\|ref\|ZP_05301588.1\| transcriptional regulator LytR [Listeria monocytogenes LO28] gi\|47097544, gi\|... - gi\|47097544\|ref\|ZP_00235080.1\| transcriptional regulator, putative [Listeria monocytogenes str. 1/2a... gi\|16804556 - gi\|16804556\|ref\|NP_466041.1\| hypothetical protein lmo2518 [Listeria monocytogenes EGD-e]	335.0	[0..1]	[328..1]
gi\|25328890, gi\|... - pir\|\|AH1764 B. subtilis probable transcription regulator LytR homolog lin2662 [imported] - Listeria ... gi\|16801723 - gi\|16801723\|ref\|NP_471991.1\| hypothetical protein lin2662 [Listeria innocua Clip11262]	335.0	[0..1]	[328..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSELEQNTR SSKKRSKRKS IKWFIIIPLF LLIFGGVGYG SLIYNKAKAV VSDAYAQIDK  60
   61 SSKRDKEVEP LKDNISILIM GVDGSEMR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSQYGEAVRT DALLLATINK DDKSVKLVSI PRDSRVYIPS RKKLDKITHA HVFGGVESTR  60
   61 DTVERFLNVP VDYYVKFNFE SFVQIVDSLG GIDIDVPVTF TEQDSKDQAG MIHLEKGYQH 120
  121 LNGEQALALA RTRKIDSDAM RGQRQQLVIE AIAKKAMSVQ SISKMGSLLD AVDKNMKT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	63.920819
Match:	PF03816.5
Description:	No description for PF03816.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [267-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLTFDDMLAI TKNMAGSNLE MEKMQIEGTD KRIGGIYYYI PNEKNVKDIS NKLNQHLGVT  60
   61 PKSVRNE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits