YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49329003, gi\|...
Organism:	Bacillus thuringiensis serovar konkukian str. 97-27
Length:	467 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49329003, gi|....

Description	E-value	Query Range	Subject Range
gi\|42781090, gi\|... - gi\|42781090\|ref\|NP_978337.1\| cytochrome d ubiquinol oxidase, subunit I [Bacillus cereus ATCC 10987],...	0.0	[1..467]	[1..467]
gi\|52143475, gi\|... - gi\|52143475\|ref\|YP_083355.1\| cytochrome d ubiquinol oxidase, subunit I [Bacillus cereus E33L], gi\|51...	0.0	[1..467]	[1..467]
gi\|238728155, gi... - gi\|77979804\|ref\|ZP_00835220.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Yersinia inter...	0.0	[1..459]	[4..452]
gi\|163939786, gi... - gi\|89207863\|ref\|ZP_01186393.1\| Cytochrome bd ubiquinol oxidase, subunit I [Bacillus weihenstephanens... gi\|228719655, gi... - gi\|229059642\|ref\|ZP_04197020.1\| Cytochrome d ubiquinol oxidase subunit 1 [Bacillus cereus AH603], gi... gi\|228616652, gi... - gi\|229166849\|ref\|ZP_04294597.1\| Cytochrome d ubiquinol oxidase subunit 1 [Bacillus cereus AH621], gi...	0.0	[1..467]	[1..467]
gi\|238718325, gi... - gi\|77963691\|ref\|ZP_00827499.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Yersinia molla...	0.0	[1..459]	[4..452]
gi\|238783236, gi... - gi\|77959410\|ref\|ZP_00823430.1\| COG1271: Cytochrome bd-type quinol oxidase, subunit 1 [Yersinia berco...	0.0	[1..459]	[4..452]
gi\|47568341, gi\|... - gi\|47568341\|ref\|ZP_00239043.1\| cytochrome d ubiquinol oxidase, subunit I [Bacillus cereus G9241], gi...	0.0	[1..467]	[1..467]
gi\|30020077, gi\|... - gi\|30020077\|ref\|NP_831708.1\| cytochrome d ubiquinol oxidase subunit I [Bacillus cereus ATCC 14579], ...	0.0	[1..467]	[1..467]
gi\|228859045, gi... - gi\|228900562\|ref\|ZP_04064784.1\| Cytochrome d ubiquinol oxidase subunit 1 [Bacillus thuringiensis IBL... gi\|74492615, gi\|... - gi\|75759913\|ref\|ZP_00739985.1\| Cytochrome d ubiquinol oxidase subunit I [Bacillus thuringiensis sero... gi\|228794741, gi... - gi\|228964950\|ref\|ZP_04126053.1\| Cytochrome d ubiquinol oxidase subunit 1 [Bacillus thuringiensis ser... gi\|228851921, gi... - gi\|228907688\|ref\|ZP_04071544.1\| Cytochrome d ubiquinol oxidase subunit 1 [Bacillus thuringiensis IBL... gi\|229150198, gi... - gi\|229150198\|ref\|ZP_04278420.1\| Cytochrome d ubiquinol oxidase subunit 1 [Bacillus cereus m1550], gi... gi\|229079144, gi... - gi\|229079144\|ref\|ZP_04211693.1\| Cytochrome d ubiquinol oxidase subunit 1 [Bacillus cereus Rock4-2], ... gi\|218232618, gi... - gi\|218232618\|ref\|YP_002366660.1\| cytochrome d ubiquinol oxidase, subunit I [Bacillus cereus B4264], ... gi\|218543079, gi... - gi\|218896925\|ref\|YP_002445336.1\| cytochrome d ubiquinol oxidase, subunit I [Bacillus cereus G9842], ...	0.0	[1..467]	[1..467]
tr\|I7B5T1\|I7B5T1... - Ubiquinol oxidase subunit I, cyanide insensitive OS=Pseudomonas putida (strain DOT-T1E) GN=cydA PE=4... gi\|26991335, gi\|... - gi\|26991335\|ref\|NP_746760.1\| ubiquinol oxidase subunit I, cyanide insensitive [Pseudomonas putida KT... gi\|82714854, gi\|... - gi\|82738077\|ref\|ZP_00900917.1\| ubiquinol oxidase subunit I, cyanide insensitive [Pseudomonas putida ...	0.0	[1..460]	[4..453]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLELARIQ FASTTIFHYF FVPLSIGLAF IIALMQTLYV VKGQEIYKKM TKFWTQIFLV  60
   61 NFAVGVVTGI LQEFQFGMNW STYSRFVGDV FGPSLAIEGL LAFFIESTFL GLWVFGEDKL 120
  121 PKRIHLLCIW LLSIGTMLSA FWILTASAFM Q

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [152-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPVGYEMAAD GRAQMNDFLA IIQNPQLWVQ FPHTITAAIA TGAFFIAGVS AWKITKAQET  60
   61 EVFKKSFRIS IIVGTLTTAL VLFFGHAQAQ QLIKTHPMKM AAAEALWNTS EDPAPFTVFA 120
  121 KIDAEKKENS FEIQIPYMLS LLSYDKFSGQ VEGMNQIQKQ YEEKYGPGDY IPPVHTMFWS 180
  181 FRAMVMSGTF MLLLGAYGWF LSRKDRLAEK TWYLKLMVYA ISLPFIGNTV GWIMTEMGRQ 240
  241 PWVVFGV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [399-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTEDAVSPN VTFGEVLFSL VSFTSLYLII GGITIYLFVR IIKGHENKKT KQDSQSHDPF  60
   61 DKEEEYVIS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits