YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30255860, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	397 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30255860, gi|....

Description	E-value	Query Range	Subject Range
gi\|65318901 - gi\|65318901\|ref\|ZP_00391860.1\| COG0617: tRNA nucleotidyltransferase/poly(A) polymerase [Bacillus ant...	0.0	[1..397]	[4..400]
CCA_BACC1 - CCA-adding enzyme OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=cca PE=3 SV=1	0.0	[1..397]	[1..397]
CCA_BACCZ - CCA-adding enzyme OS=Bacillus cereus (strain ZK / E33L) GN=cca PE=3 SV=1	0.0	[1..397]	[1..397]
gi\|47556916, gi\|... - gi\|47565999\|ref\|ZP_00237037.1\| polyA polymerase [Bacillus cereus G9241], gi\|47556916\|gb\|EAL15246.1\| ...	0.0	[1..397]	[1..397]
CCA_BACCR - CCA-adding enzyme OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 937... CCA_BACC4 - CCA-adding enzyme OS=Bacillus cereus (strain B4264) GN=cca PE=3 SV=1	0.0	[1..397]	[1..397]
CCA_BACCN - CCA-adding enzyme OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=c...	0.0	[1..397]	[1..397]
gi\|74492117, gi\|... - gi\|75760406\|ref\|ZP_00740450.1\| POLY(A) POLYMERASE / TRNA NUCLEOTIDYLTRANSFERASE [Bacillus thuringie...	0.0	[1..397]	[4..400]
CCA_BACWK - CCA-adding enzyme OS=Bacillus weihenstephanensis (strain KBAB4) GN=cca PE=3 SV=1	0.0	[1..397]	[1..397]
CCA_GEOSE - CCA-adding enzyme OS=Geobacillus stearothermophilus GN=cca PE=1 SV=1	0.0	[3..395]	[4..397]
CCA_ENTFA - CCA-adding enzyme OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=cca PE=3 SV=1 CCA_ENTFA - CCA-adding enzyme OS=Enterococcus faecalis GN=cca PE=3 SV=1 gi\|227518748, gi... - gi\|227518748\|ref\|ZP_03948797.1\| tRNA adenylyltransferase [Enterococcus faecalis TX0104], gi\|22707380...	0.0	[4..395]	[10..400]

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Predicted Domain #1

Region A:
Residues: [1-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERFKKASSI IETLKQQGHE AYFVGGSVRD LIIDRPIGDI DIATSALPEE VMAIFPRHVP  60
   61 VGLEHGTVIV VENGEPYEVT TFRTESEYED FRRPSSVQFV RSLEEDLKRR DFTMNAIAMT 120
  121 EEGEMVDLFA GQEAIQKREI VTVGNAADRF QEDALRMMRG IRFVSTLGFS LETKTKQAIE 180
  181 TYGHLLEHIA IERITVEFEK LLTGTYCVKG LKELVETKLF SHLPYLQMSE ERLLKATQYN 240
  241 WDSFETDIEA WAFFLYCIGE EHPSVFLRQW KFSNKKIKDI VAVLLTIRKR KEKDWDTVLL 300
  301 YKTGIHIAEM AERVYEAMIE SYDHTSVERV QTLFQALPIK SRQEMDVTGN DLLNWASKKP 360
  361 GPWVAEMIQK IEEAIVQGNV VNEKECIREW LQECNLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	1mivA
Description:	tRNA CCA-adding enzyme, C-terminal domains; tRNA CCA-adding enzyme, head domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.122769147009	bayes_pls_golite062009
nucleotidyltransferase activity	0.92178707322923	bayes_pls_golite062009
polynucleotide adenylyltransferase activity	0.911825870004661	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.667889614569279	bayes_pls_golite062009
transferase activity	0.63270331673446	bayes_pls_golite062009
RNA binding	0.38230161031124	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: