YRC Public Data Repository - Protein Structure Prediction

Protein:	PGSC0003DMP400026038
Organism:	Solanum tuberosum
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGSC0003DMP400026038.

Description	E-value	Query Range	Subject Range
gi\|29423681 - gi\|29423681\|gb\|AAO73434.1\| DAD1 [Petunia x hybrida]	173.0	[0..1]	[116..1]
gi\|92898955 - gi\|92898955\|gb\|ABE94463.1\| Defender against death DAD protein [Medicago truncatula]	171.0	[0..1]	[116..1]
DAD1_PEA - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Pisum sativum GN=DAD1...	171.0	[0..1]	[116..1]
gi\|13548685 - gi\|13548685\|dbj\|BAB40808.1\| homolog of defender against apoptotic death 1 homolog [Nicotiana suaveol...	171.0	[0..1]	[116..1]
gi\|106879663 - gi\|106879663\|emb\|CAJ42302.1\| defender against apoptotic death 1 [Plantago major]	167.0	[0..5]	[116..5]
gi\|25313138 - gi\|25313138\|pir\|\|F84769 defender against cell death protein [imported] - Arabidopsis thaliana	165.0	[0..5]	[116..49]
DAD1_CITUN - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Citrus unshiu GN=DAD1...	165.0	[0..5]	[116..4]
DAD1_PICMA - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Picea mariana GN=DAD1...	164.0	[0..4]	[116..3]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSSATKDA QALFHSLRSA YAATPTNLKI IDLYVIFAIS TALIQVVYMA IVGSFPFNSF  60
   61 LSGVLSCIGT AVLAVCLRIQ VNKENKEFKD LPPERAFADF VLCNLVLHLV IMNFLG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.853872
Match:	PF02109.7
Description:	No description for PF02109.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.994	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits