YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253550, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	255 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253550, gi|....

Description	E-value	Query Range	Subject Range
gi\|89084133, gi\|... - gi\|89101165\|ref\|ZP_01173998.1\| YabD [Bacillus sp. NRRL B-14911], gi\|89084133\|gb\|EAR63301.1\| YabD [Ba...	4.0E-88	[1..254]	[1..254]
gi\|52078534, gi\|... - gi\|52783896\|ref\|YP_089725.1\| YabD [Bacillus licheniformis ATCC 14580], gi\|52346398\|gb\|AAU39032.1\| Ya...	6.0E-87	[1..254]	[1..254]
gi\|217066631, gi... - gi\|217957615\|ref\|YP_002336157.1\| deoxyribonuclease, TatD family [Bacillus cereus AH187], gi\|21706663... gi\|229136886, gi... - gi\|229136886\|ref\|ZP_04265514.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus BDRD-ST26], ... gi\|222093809, gi... - gi\|222093809\|ref\|YP_002527858.1\| TatD related DNase [Bacillus cereus Q1], gi\|221237856\|gb\|ACM10566.1... gi\|228983295, gi... - gi\|228983295\|ref\|ZP_04143509.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|206743852, gi... - gi\|206977946\|ref\|ZP_03238833.1\| deoxyribonuclease, TatD family [Bacillus cereus H3081.97], gi\|206743... gi\|228629622, gi... - gi\|229153818\|ref\|ZP_04281949.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus ATCC 4342], ... gi\|47569888, gi\|... - gi\|47569888\|ref\|ZP_00240555.1\| sec-independent secretion protein tatD [Bacillus cereus G9241], gi\|47...	1.0E-85	[1..255]	[1..255]
gi\|89207208, gi\|... - gi\|89207208\|ref\|ZP_01185754.1\| TatD-related deoxyribonuclease [Bacillus weihenstephanensis KBAB4], g... gi\|229131047, gi... - gi\|229131047\|ref\|ZP_04259960.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus BDRD-ST196],... gi\|228751693, gi... - gi\|229009549\|ref\|ZP_04166776.1\| Uncharacterized deoxyribonuclease yabD [Bacillus mycoides DSM 2048],... gi\|229165028, gi... - gi\|229165028\|ref\|ZP_04292824.1\| Uncharacterized deoxyribonuclease yabD [Bacillus cereus AH621], gi\|2...	1.0E-85	[1..255]	[1..255]
gi\|218542555, gi... - gi\|218895175\|ref\|YP_002443586.1\| deoxyribonuclease, TatD family [Bacillus cereus G9842], gi\|21854255... gi\|75759601, gi\|... - gi\|75759601\|ref\|ZP_00739687.1\| DNase, TatD family [Bacillus thuringiensis serovar israelensis ATCC 3... gi\|228796523, gi... - gi\|228963138\|ref\|ZP_04124308.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis serov... gi\|228898793, gi... - gi\|228898793\|ref\|ZP_04063076.1\| Uncharacterized deoxyribonuclease yabD [Bacillus thuringiensis IBL 4...	2.0E-85	[1..255]	[1..255]
gi\|42735033, gi\|... - gi\|42779118\|ref\|NP_976365.1\| TatD family deoxyribonuclease [Bacillus cereus ATCC 10987], gi\|42735033...	2.0E-85	[1..255]	[1..255]
YABD_BACSU - Uncharacterized metal-dependent hydrolase YabD OS=Bacillus subtilis (strain 168) GN=yabD PE=3 SV=1 YABD_BACSU - Uncharacterized deoxyribonuclease YabD OS=Bacillus subtilis GN=yabD PE=3 SV=1 gi\|221312170 - gi\|221312170\|ref\|ZP_03593975.1\| hypothetical protein BsubsN3_00195 [Bacillus subtilis subsp. subtili... gi\|221321366 - gi\|221321366\|ref\|ZP_03602660.1\| hypothetical protein BsubsS_00195 [Bacillus subtilis subsp. subtilis... gi\|221317103 - gi\|221317103\|ref\|ZP_03598397.1\| hypothetical protein BsubsJ_00195 [Bacillus subtilis subsp. subtilis...	2.0E-85	[1..254]	[1..254]
gi\|52145176, gi\|... - gi\|52145176\|ref\|YP_081652.1\| TatD related DNase [Bacillus cereus E33L], gi\|51978645\|gb\|AAU20195.1\| T...	3.0E-85	[1..255]	[1..255]
gi\|152022639, gi... - gi\|89202241\|ref\|ZP_01180969.1\| TatD-related deoxyribonuclease [Bacillus cereus subsp. cytotoxis NVH ...	7.0E-85	[1..255]	[1..255]
gi\|29893850, gi\|... - gi\|30018310\|ref\|NP_829941.1\| Sec-independent secretion protein tatD [Bacillus cereus ATCC 14579], gi...	1.0E-84	[2..255]	[1..254]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFDTHSHLN AEQFEEDLQE VIARMKEAGV TYTVVVGFDE ATIKKAIELA EAYDFIYAAV  60
   61 GWHPVDAIDM TEEHLAWLEE LASHPKVVAL GEMGLDYHWD KSPKEIQKEV FRKQITLAKK 120
  121 VKLPIIIHNR DATQDIVDIL EEENAAEVGG IMHCFSGSVE VAERCVDMNF LISLGGPVTF 180
  181 KNAKKPKEVA TEIPLEKLLI ETDCPYLTPH PFRGKRNEPS YVKLVAEEIA NLKGISYEEV 240
  241 AEITTKNAKA LFGVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.221849
Match:	2gzxA
Description:	No description for 2gzxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits