YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260899, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	313 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260899, gi|....

Description	E-value	Query Range	Subject Range
gi\|21398711, gi\|... - gi\|65318175\|ref\|ZP_00391134.1\| COG0524: Sugar kinases, ribokinase family [Bacillus anthracis str. A2...	2.0E-69	[1..313]	[1..313]
gi\|30018932, gi\|... - gi\|30018932\|ref\|NP_830563.1\| fructokinase [Bacillus cereus ATCC 14579], gi\|29894474\|gb\|AAP07764.1\| F...	3.0E-68	[1..312]	[1..312]
SCRK6_ARATH - Probable fructokinase-6, chloroplastic OS=Arabidopsis thaliana GN=At1g66430 PE=2 SV=1	8.0E-68	[4..312]	[66..379]
gi\|242258302, gi... - gi\|242258302\|ref\|ZP_04803121.1\| PfkB domain protein [Thermoanaerobacter sp. X513], gi\|242230185\|gb\|E... gi\|167039768, gi... - gi\|167039768\|ref\|YP_001662753.1\| ribokinase-like domain-containing protein [Thermoanaerobacter sp. X...	2.0E-67	[1..312]	[1..314]
gi\|241903428, gi... - gi\|241903428\|ref\|ZP_04788152.1\| PfkB domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1]... gi\|166855888, gi... - gi\|76796323\|ref\|ZP_00778688.1\| PfkB [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76588360\|gb\|EAO6...	3.0E-67	[1..312]	[1..314]

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Predicted Domain #1

Region A:
Residues: [1-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNVFCIGEL LIDFVCRNTN VSLVNGSNFE KKAGGAPANV AAAITKLGGH ATFMGQVGND  60
   61 PFGEFLEQTL QHAHVDTSML IKDKQTTLAF VSIDQNGERD FTFMRGADGE YHFNSIDLSK 120
  121 IKTNDLIHFG SATALLSSPL KDTYFQLLQH ARESGQFISF DPNYRNALIT NTEQFIQDCL 180
  181 TFIKHAHFVK VSQEEAIMLS KESDLQQSAL KLLNHGAKAV AITLGKDGTL LATKDKQTIV 240
  241 PSISIQQVDT TGAGDAFVGA MLYQIAKSEQ MFLHNFEGLT TFISFANKVG ALTCTNYGAI 300
  301 SSLPSLTDVK AYE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.0
Match:	1tyyA
Description:	Crystal structure of aminoimidazole riboside kinase from Salmonella enterica
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribokinase activity	4.13972810632318	bayes_pls_golite062009
2-dehydro-3-deoxygluconokinase activity	2.46896350528821	bayes_pls_golite062009
carbohydrate kinase activity	1.90161570778186	bayes_pls_golite062009
catalytic activity	1.74474587246986	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.57283837951122	bayes_pls_golite062009
kinase activity	1.55417626447151	bayes_pls_golite062009
transferase activity	1.45532444493305	bayes_pls_golite062009
phosphofructokinase activity	0.337329596908884	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: