YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30254243, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30254243, gi|....

Description	E-value	Query Range	Subject Range
gi\|42735703, gi\|... - gi\|42779786\|ref\|NP_977033.1\| amino acid ABC transporter, amino acid-binding protein [Bacillus cereus... gi\|51978141, gi\|... - gi\|52144672\|ref\|YP_082157.1\| glytamine ABC transporter substrate-binding protein [Bacillus cereus E3...	1.0E-64	[1..276]	[1..276]
gi\|29894367, gi\|... - gi\|30018825\|ref\|NP_830456.1\| glutamine-binding protein [Bacillus cereus ATCC 14579], gi\|29894367\|gb\|... gi\|229126071, gi... - gi\|229126071\|ref\|ZP_04255093.1\| hypothetical protein bcere0015_5340 [Bacillus cereus BDRD-Cer4], gi\|...	5.0E-64	[1..276]	[1..276]
gi\|89150472, gi\|... - gi\|89201556\|ref\|ZP_01180295.1\| extracellular solute-binding protein, family 3 [Bacillus cereus subsp...	5.0E-64	[1..276]	[2..276]
gi\|228634518, gi... - gi\|229148978\|ref\|ZP_04277223.1\| hypothetical protein bcere0011_5470 [Bacillus cereus m1550], gi\|2286... gi\|47555245, gi\|... - gi\|47568091\|ref\|ZP_00238796.1\| amino acid ABC transporter, amino acid-binding protein [Bacillus cere... gi\|218160401, gi... - gi\|218232444\|ref\|YP_002365436.1\| amino acid ABC transporter, amino acid-binding protein [Bacillus ce...	7.0E-64	[1..276]	[1..276]
gi\|228651874, gi... - gi\|229131583\|ref\|ZP_04260466.1\| hypothetical protein bcere0014_5420 [Bacillus cereus BDRD-ST196], gi... gi\|89155883, gi\|... - gi\|89206159\|ref\|ZP_01184721.1\| extracellular solute-binding protein, family 3 [Bacillus weihenstepha...	7.0E-64	[1..276]	[1..276]
GLNH_BACSU - ABC transporter glutamine-binding protein glnH OS=Bacillus subtilis GN=glnH PE=2 SV=1 gi\|221319924 - gi\|221319924\|ref\|ZP_03601218.1\| glutamine ABC transporter (glutamine-binding protein) [Bacillus subt... gi\|221324205 - gi\|221324205\|ref\|ZP_03605499.1\| glutamine ABC transporter (glutamine-binding protein) [Bacillus subt... gi\|221315003 - gi\|221315003\|ref\|ZP_03596808.1\| glutamine ABC transporter (glutamine-binding protein) [Bacillus subt... GLNH_BACSU - ABC transporter glutamine-binding protein GlnH OS=Bacillus subtilis (strain 168) GN=glnH PE=2 SV=1	1.0E-60	[4..276]	[1..273]
gi\|229499644, gi... - gi\|229499644\|ref\|ZP_04393326.1\| extracellular solute-binding protein family 3 [Geobacillus sp. Y412M... gi\|221089580, gi... - gi\|221089580\|ref\|ZP_03559095.1\| extracellular solute-binding protein family 3 [Geobacillus sp. Y412M... gi\|56420512, gi\|... - gi\|56420512\|ref\|YP_147830.1\| glutamine ABC transporter (glutamine-binding protein) [Geobacillus kaus...	2.0E-60	[5..275]	[7..280]
gi\|69246349, gi\|... - gi\|69246349\|ref\|ZP_00603905.1\| extracellular solute-binding protein, family 3 [Enterococcus faecium ... gi\|48825126 - ref\|ZP_00286412.1\| COG0834: ABC-type amino acid transport/signal transduction systems, periplasmic c...	3.0E-56	[2..275]	[1..267]
gi\|56962545, gi\|... - gi\|56962545\|ref\|YP_174271.1\| glutamine ABC transporter substrate-binding protein [Bacillus clausii K...	2.0E-55	[22..275]	[18..273]
gi\|77975692 - gi\|77975692\|ref\|ZP_00831226.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	2.0E-55	[18..276]	[10..266]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKMKKLFTL IVFSCLFVLV VAGCGSKKDE AKETNTKQGG AVEQIKKRGK LVVGVKNDTN  60
   61 LFGLKNPSTG QVEGFDVDVA KALAKKILGD EKKLELKEVT SKTRIPLLKN GDIDAIIATM 120
  121 TITEERKKEV DFSDVYFKAG QSLLVKKGSD IKSIDDVKKG VKVLAVKGST STNNIRQKSP 180
  181 EATVLEFENY SEAFTALKAG KGDVLTTDNA ILYGMAKQDS NYEVVGKIFT DEPYGIAVQK 240
  241 GADDLTKEIN SLIKDMKANG EYDKLYEKWI GQKPEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	2v25A
Description:	No description for 2v25A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits