YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49476813, gi\|...
Organism:	Bacillus thuringiensis serovar konkukian str. 97-27
Length:	263 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49476813, gi|....

Description	E-value	Query Range	Subject Range
gi\|49610880, gi\|... - gi\|50120354\|ref\|YP_049521.1\| hypothetical protein ECA1415 [Pectobacterium atrosepticum SCRI1043], gi...	3.0E-66	[21..263]	[1..255]
gi\|66045579, gi\|... - gi\|66045579\|ref\|YP_235420.1\| CBS:transporter-associated region:integral membrane protein TerC [Pseud...	6.0E-66	[21..259]	[1..245]
gi\|71554274, gi\|... - gi\|71733721\|ref\|YP_275009.1\| TerC family membrane protein [Pseudomonas syringae pv. phaseolicola 144...	1.0E-65	[21..259]	[1..245]
tr\|Q882U0\|Q882U0... - Membrane protein, TerC family OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_2532 PE=4 ... gi\|28852967, gi\|... - gi\|28869725\|ref\|NP_792344.1\| TerC family membrane protein [Pseudomonas syringae pv. tomato str. DC30...	1.0E-65	[21..259]	[1..245]
gi\|16761048 - gi\|16761048\|ref\|NP_456665.1\| hypothetical protein STY2332 [Salmonella enterica subsp. enterica serov... gi\|213425528 - gi\|213425528\|ref\|ZP_03358278.1\| hypothetical protein SentesTyphi_07570 [Salmonella enterica subsp. e... gi\|214000546 - gi\|214000546\|ref\|ZP_03411281.1\| hypothetical protein Salmonellentericaenterica_07956 [Salmonella ent... gi\|25512306, gi\|... - gi\|25512306\|pir\|\|AD0770 probable membrane protein yegH [imported] - Salmonella enterica subsp. enter... gi\|29136881, gi\|... - gi\|29141255\|ref\|NP_804597.1\| hypothetical protein t0753 [Salmonella enterica subsp. enterica serovar... gi\|213052469 - gi\|213052469\|ref\|ZP_03345347.1\| hypothetical protein Salmoneentericaenterica_05771 [Salmonella enter...	1.0E-65	[21..251]	[1..237]
gi\|16420653, gi\|... - gi\|16765449\|ref\|NP_461064.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164206... gi\|161613199, gi... - gi\|161613199\|ref\|YP_001587164.1\| hypothetical protein SPAB_00909 [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=yegH] [protein=putative inner membrane protein] [protein_id=YP_005238156.1] [location=2254878.... gi\|238912548 - gi\|238912548\|ref\|ZP_04656385.1\| hypothetical protein SentesTe_15647 [Salmonella enterica subsp. ente...	1.0E-65	[21..251]	[1..237]
gi\|62180691, gi\|... - gi\|62180691\|ref\|YP_217108.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se...	1.0E-65	[21..251]	[1..237]
gi\|82735749, gi\|... - gi\|82735749\|ref\|ZP_00898611.1\| CBS domain protein [Pseudomonas putida F1], gi\|82717382\|gb\|EAP52434.1...	2.0E-65	[21..258]	[1..244]
tr\|E4RB86\|E4RB86... - CBS domain-containing protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_2353 PE=4 SV=1 gi\|26990150, gi\|... - gi\|26990150\|ref\|NP_745575.1\| CBS domain-containing protein [Pseudomonas putida KT2440], gi\|24985086\|...	3.0E-65	[21..258]	[1..244]
gi\|25526554 - pir\|\|AI3335 integral membrane protein / hemolysin [imported] - Brucella melitensis (strain 16M) gi\|17982600, gi\|... - gi\|17986954\|ref\|NP_539588.1\| integral membrane protein / hemolysin [Brucella melitensis 16M], gi\|179...	3.0E-65	[17..251]	[1..241]

Back

Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILQGILDT YAQFFDLDMW IKVLQDPVSW GLIGTLVVLE GLLSADNALV LAVMVKHLPE  60
   61 EKRKKALFYG LIGAYVFRFI AIGIGMFLIK LAWVKVLGAL YLAWLSVKYF IDKRKGNAEE 120
  121 EEAHGMNQN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.769551
Match:	PF03741.7
Description:	No description for PF03741.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [130-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SILFRMFGVF WGTVAMVELM DIAFSVDSVL AAFGVSNEVW ILLLGGMLGI LMMRGIAGVF  60
   61 LKLLERIPEL ETTAYILILI IAAKMLLSVI HIEVSHTLFF IILVVAFGAT FILHYVKNSG 120
  121 QAKEEVAATK NNHK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits