YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|65317606, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	448 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|65317606, gi|....

Description	E-value	Query Range	Subject Range
gi\|170731982, gi... - gi\|170731982\|ref\|YP_001763929.1\| gluconate transporter [Burkholderia cenocepacia MC0-3], gi\|16981522... gi\|116646774, gi... - gi\|67666947\|ref\|ZP_00464183.1\| Gluconate transporter [Burkholderia cenocepacia HI2424], gi\|67099473\|... gi\|67092001, gi\|... - gi\|67660372\|ref\|ZP_00457720.1\| Gluconate transporter [Burkholderia cenocepacia AU 1054], gi\|67092001...	3.0E-57	[1..448]	[8..453]
GNTP_BACSU - Gluconate permease OS=Bacillus subtilis (strain 168) GN=gntP PE=3 SV=1 GNTP_BACSU - Gluconate permease OS=Bacillus subtilis GN=gntP PE=3 SV=1 gi\|221325500 - gi\|221325500\|ref\|ZP_03606794.1\| gluconate permease [Bacillus subtilis subsp. subtilis str. SMY] gi\|221321217 - gi\|221321217\|ref\|ZP_03602511.1\| gluconate permease [Bacillus subtilis subsp. subtilis str. JH642] gi\|221316304 - gi\|221316304\|ref\|ZP_03598109.1\| gluconate permease [Bacillus subtilis subsp. subtilis str. NCIB 3610...	7.0E-57	[1..448]	[1..448]
gi\|83653210, gi\|... - gi\|83719385\|ref\|YP_441766.1\| gluconate permease, putative [Burkholderia thailandensis E264], gi\|8365...	1.0E-56	[1..448]	[8..453]
gi\|72494236, gi\|... - gi\|73661721\|ref\|YP_300502.1\| gluconate permease [Staphylococcus saprophyticus subsp. saprophyticus A...	2.0E-56	[2..448]	[7..452]
gi\|78065224, gi\|... - gi\|78065224\|ref\|YP_367993.1\| gluconate transporter [Burkholderia sp. 383], gi\|77965969\|gb\|ABB07349.1...	2.0E-56	[1..448]	[8..453]
gi\|124871105, gi... - gi\|84356706\|ref\|ZP_00981542.1\| COG2610: H+/gluconate symporter and related permeases [Burkholderia c...	2.0E-56	[1..448]	[8..453]
gi\|222093931, gi... - gi\|222093931\|ref\|YP_002527982.1\| gluconate permease [Bacillus cereus Q1], gi\|221237980\|gb\|ACM10690.1... gi\|228983418, gi... - gi\|228983418\|ref\|ZP_04143630.1\| Gluconate permease [Bacillus thuringiensis serovar tochigiensis BGSC... gi\|228629462, gi... - gi\|229153941\|ref\|ZP_04282070.1\| Gluconate permease [Bacillus cereus ATCC 4342], gi\|228629462\|gb\|EEK8... gi\|228646420, gi... - gi\|229137009\|ref\|ZP_04265635.1\| Gluconate permease [Bacillus cereus BDRD-ST26], gi\|228646420\|gb\|EEL0... gi\|47565366, gi\|... - gi\|47565366\|ref\|ZP_00236408.1\| gluconate permease [Bacillus cereus G9241], gi\|47557720\|gb\|EAL16046.1... gi\|208742269 - gi\|208742269\|ref\|YP_002267721.1\| gluconate permease [Bacillus cereus] gi\|52145057, gi\|... - gi\|52145057\|ref\|YP_081772.1\| gluconate permease [Bacillus cereus E33L], gi\|51978526\|gb\|AAU20076.1\| g... gi\|217065953, gi... - gi\|217957736\|ref\|YP_002336280.1\| gluconate permease [Bacillus cereus AH187], gi\|217065953\|gb\|ACJ8020... gi\|196041143, gi... - gi\|196041143\|ref\|ZP_03108439.1\| gluconate permease [Bacillus cereus NVH0597-99], gi\|196028078\|gb\|EDX... gi\|206743764, gi... - gi\|206978051\|ref\|ZP_03238936.1\| gluconate permease [Bacillus cereus H3081.97], gi\|206743764\|gb\|EDZ55...	2.0E-55	[1..448]	[1..448]
gi\|48785121, gi\|... - gi\|91785188\|ref\|YP_560394.1\| Na+/gluconate symporter, GntP [Burkholderia xenovorans LB400], gi\|91689...	2.0E-55	[1..448]	[8..465]
gi\|167825811 - gi\|167825811\|ref\|ZP_02457282.1\| transporter, gluconate:H+ symporter (GntP) family protein [Burkholde... gi\|167895882 - gi\|167895882\|ref\|ZP_02483284.1\| transporter, gluconate:H+ symporter (GntP) family protein [Burkholde... gi\|167920484 - gi\|167920484\|ref\|ZP_02507575.1\| transporter, gluconate:H+ symporter (GntP) family protein [Burkholde... gi\|157808966, gi... - gi\|83680084\|ref\|ZP_00941792.1\| COG2610: H+/gluconate symporter and related permeases [Burkholderia p... gi\|217396088, gi... - gi\|217420676\|ref\|ZP_03452181.1\| transporter, gluconate:H+ symporter (GntP) family [Burkholderia pseu... gi\|99912829, gi\|... - gi\|99912829\|ref\|ZP_01319527.1\| hypothetical protein Bpse1_03001094 [Burkholderia pseudomallei 1655],... gi\|161373492, gi... - gi\|90293291\|ref\|ZP_01212893.1\| hypothetical protein Bpse17_02001940 [Burkholderia pseudomallei 1710a... gi\|67737582 - gi\|67737582\|ref\|ZP_00488331.1\| COG2610: H+/gluconate symporter and related permeases [Burkholderia p... gi\|100059101, gi... - gi\|67753096\|ref\|ZP_00492044.1\| COG2610: H+/gluconate symporter and related permeases [Burkholderia p... gi\|100124558, gi... - gi\|67761747\|ref\|ZP_00500453.1\| COG2610: H+/gluconate symporter and related permeases [Burkholderia p...	3.0E-55	[1..448]	[1..446]
gi\|115280599, gi... - gi\|74019709\|ref\|ZP_00690322.1\| Gluconate transporter [Burkholderia ambifaria AMMD], gi\|72607521\|gb\|E... gi\|118641437, gi... - gi\|172059644\|ref\|YP_001807296.1\| gluconate transporter [Burkholderia ambifaria MC40-6], gi\|171992161...	3.0E-55	[1..448]	[8..453]

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Predicted Domain #1

Region A:
Residues: [1-254]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLVIVAIGI LALLLLIMRF KLNTFISLII VSVGVALALG MPPEKIFKTI EAGLGGTLGH  60
   61 LALVFGLGAM LGKLLSDSGG AQRIAMTLVK KFGEKNIQWA VVTASFIIGI ALFFEVGLVL 120
  121 LIPIVFAISR ELKVSILYLG ISMAAALSVT HGFLPPHPGP TAIAGELHAN IGEVLLYGFM 180
  181 IAVPTVVLAG PVFTKLAKKL VPEAFTKTGN IQSLGEQKVF KLEETPGFGI SVFTALLPVL 240
  241 LMAVATIITL LQKT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [255-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFKDNSLLA TIEFIGNADT AMLISLLVAI YTMGLARNIP IKSVMESCTT AISNIGMMLL  60
   61 IIGGGGAFKQ VLIDGGVGNY VAELFKGTSL SPILLAWIIA AILRISLGSA TVAALTTVGL 120
  121 VIPMLGQSDV NLALVVLATG AGSLIASHVN DAGFWMFKEY FGLSMKETFA TWTLLETIVS 180
  181 VAGLGFTLLL SLFV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits