YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21397927
Organism:	Bacillus anthracis str. A2012
Length:	522 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21397927.

Description	E-value	Query Range	Subject Range
gi\|26990662, gi\|... - gi\|26990662\|ref\|NP_746087.1\| choline/carnitine/betaine transporter family protein [Pseudomonas putid... tr\|E4RG06\|E4RG06... - Choline/carnitine/betaine transporter family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIR...	0.0	[7..507]	[10..507]
gi\|194554807, gi... - gi\|84324003\|ref\|ZP_00972068.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ...	0.0	[7..507]	[10..507]
gi\|218894394, gi... - gi\|218894394\|ref\|YP_002443264.1\| putative choline transporter [Pseudomonas aeruginosa LESB58], gi\|21... gi\|194548998, gi... - gi\|84317840\|ref\|ZP_00966275.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|11351182 - pir\|\|G82985 probable choline transporter PA5291 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|53726738, gi\|... - gi\|53726738\|ref\|ZP_00141772.2\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|107104392 - gi\|107104392\|ref\|ZP_01368310.1\| hypothetical protein PaerPA_01005468 [Pseudomonas aeruginosa PACS2] gi\|15600484, gi\|... - gi\|9951605\|gb\|AAG08676.1\|AE004941_9 probable choline transporter [Pseudomonas aeruginosa PAO1], gi\|1...	0.0	[7..507]	[10..507]
gi\|152986479, gi... - gi\|94417776\|ref\|ZP_01297593.1\| hypothetical protein PaerP_01000558 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[7..507]	[10..507]
gi\|33574349 - gi\|33574349\|emb\|CAE38685.1\| high-affinity choline transport protein [Bordetella parapertussis] gi\|33597920 - gi\|33597920\|ref\|NP_885563.1\| high-affinity choline transport protein [Bordetella parapertussis 12822...	0.0	[5..505]	[6..503]
gi\|33571643, gi\|... - gi\|33591999\|ref\|NP_879643.1\| high-affinity choline transport protein [Bordetella pertussis Tohama I]... gi\|33602825, gi\|... - gi\|33602825\|ref\|NP_890385.1\| high-affinity choline transport protein [Bordetella bronchiseptica RB50...	0.0	[5..505]	[6..503]
gi\|48729140, gi\|... - gi\|77456475\|ref\|YP_345980.1\| BCCT transporter [Pseudomonas fluorescens Pf0-1], gi\|77380478\|gb\|ABA719...	0.0	[7..502]	[13..509]
gi\|1524397\|gb\|AA... - glycine betaine transporter OpuD OPUD_BACSU - Glycine betaine transporter OpuD OS=Bacillus subtilis (strain 168) GN=opuD PE=1 SV=1 OPUD_BACSU - Glycine betaine transporter OpuD OS=Bacillus subtilis GN=opuD PE=3 SV=1	0.0	[7..518]	[3..511]
gi\|91201825 - gi\|91201825\|emb\|CAJ74885.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	0.0	[7..498]	[12..502]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMKSRKTDW PVFLISGGSL LLFVIAVFLN KSYVEGVINS SFAASIKYFG AFWQILLIGT  60
   61 FVVAMCMAFS KYGRVKLG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [79-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLEKPEISTT KWLAIIMSTL LAGGGVFWAA AEPMYHLMTV PPIHEGITAG TKEAVMPALA  60
   61 QSYMHWGFLA WTILGTISAV VMMYGHYHKG MPLKPRTLLY PIFGEKLRKS WLGTLIDAFA 120
  121 IIAVAAGTIG PIGFLGLQAS YGLQALFNIP DVFTTQLAII VCVVAVSTIS AVTGIDKGIQ 180
  181 IISNLNVRLA ILLMVFVLLF GPGG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [283-437]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FIIDSFVSSF GFYINEFIPM STYRGDTTWL GSWTIFFWGW FIGYGPMMAI LVSRISRGRT  60
   61 IREIIVAIGI IAPIITTFWF TILGGSGVFY ELMKPGSISS ALSESGMPAA MIAITEQLPL 120
  121 SHIIGPAFLL LTILFVVTTG DSMAYSISMA VTGDG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [438-522]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPRISLRVFW SLIMGTVAAI LLYMGEGSIN ALQSFIVVTA VPVSILLFPM LWLAPKVAGE  60
   61 LALKQGIVKE EEKTSFLFQK ASKSK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits