YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30260043, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	379 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260043, gi|....

Description	E-value	Query Range	Subject Range
gi\|77996195, gi\|... - gi\|78044080\|ref\|YP_360183.1\| butyryl-CoA dehydrogenase [Carboxydothermus hydrogenoformans Z-2901], g...	0.0	[1..379]	[1..379]
gi\|221087039, gi... - gi\|221087039\|ref\|ZP_03556579.1\| acyl-CoA dehydrogenase domain protein [Geobacillus sp. Y412MC61], gi... gi\|229331248, gi... - gi\|229497822\|ref\|ZP_04391521.1\| acyl-CoA dehydrogenase domain protein [Geobacillus sp. Y412MC52], gi... gi\|56381770, gi\|... - gi\|56421928\|ref\|YP_149246.1\| acyl-CoA dehydrogenase [Geobacillus kaustophilus HTA426], gi\|56381770\|d...	0.0	[1..379]	[1..379]
gi\|228670589, gi... - gi\|229112755\|ref\|ZP_04242287.1\| Acyl-CoA dehydrogenase [Bacillus cereus Rock1-15], gi\|228670589\|gb\|E... gi\|218160858, gi... - gi\|218232901\|ref\|YP_002370118.1\| acyl-CoA dehydrogenase [Bacillus cereus B4264], gi\|218160858\|gb\|ACK... gi\|228722321, gi... - gi\|229051012\|ref\|ZP_04194560.1\| Acyl-CoA dehydrogenase [Bacillus cereus AH676], gi\|228722321\|gb\|EEL7... gi\|228798087, gi... - gi\|228961605\|ref\|ZP_04123214.1\| Acyl-CoA dehydrogenase [Bacillus thuringiensis serovar pakistani str... gi\|229147881, gi... - gi\|229147881\|ref\|ZP_04276222.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-ST24], gi\|228635531\|gb\|... gi\|229130590, gi... - gi\|229130590\|ref\|ZP_04259546.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228652929\|gb\|... gi\|29898933, gi\|... - gi\|30023372\|ref\|NP_835003.1\| Acyl-CoA dehydrogenase, short-chain specific [Bacillus cereus ATCC 1457...	0.0	[1..379]	[1..379]
gi\|89089326, gi\|... - gi\|89095580\|ref\|ZP_01168474.1\| acyl-CoA dehydrogenase [Bacillus sp. NRRL B-14911], gi\|89089326\|gb\|EA...	0.0	[1..379]	[1..379]
gi\|19704756, gi\|... - gi\|19715082\|gb\|AAL95617.1\| ACYL-COA dehydrogenase, short-chain specific [Fusobacterium nucleatum sub...	0.0	[1..378]	[1..378]
gi\|228716292, gi... - gi\|229064991\|ref\|ZP_04200289.1\| Acyl-CoA dehydrogenase [Bacillus cereus AH603], gi\|228716292\|gb\|EEL6... gi\|229014510, gi... - gi\|229014510\|ref\|ZP_04171628.1\| Acyl-CoA dehydrogenase [Bacillus mycoides DSM 2048], gi\|228746860\|gb... gi\|229170050, gi... - gi\|229170050\|ref\|ZP_04297741.1\| Acyl-CoA dehydrogenase [Bacillus cereus AH621], gi\|228613397\|gb\|EEK7... gi\|228647319, gi... - gi\|229136160\|ref\|ZP_04264913.1\| Acyl-CoA dehydrogenase [Bacillus cereus BDRD-ST196], gi\|228647319\|gb... gi\|163865226, gi... - gi\|89205891\|ref\|ZP_01184456.1\| Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central re...	0.0	[1..379]	[1..379]
gi\|42784517, gi\|... - gi\|42784517\|ref\|NP_981764.1\| acyl-CoA dehydrogenase [Bacillus cereus ATCC 10987], gi\|42740449\|gb\|AAS...	0.0	[1..379]	[1..379]
gi\|22778698, gi\|... - gi\|23100465\|ref\|NP_693932.1\| acyl-CoA dehydrogenase [Oceanobacillus iheyensis HTE831], gi\|22778698\|d...	0.0	[1..379]	[1..379]
gi\|52140219, gi\|... - gi\|52140219\|ref\|YP_086610.1\| acyl-CoA dehydrogenase [Bacillus cereus E33L], gi\|51973688\|gb\|AAU15238....	0.0	[1..379]	[1..379]

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Predicted Domain #1

Region A:
Residues: [1-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFKLSEEHE MIRKMVRDFA KNEVAPTAAE RDEEERFDRA IFDQMAELGL TGIPWPEEYG  60
   61 GIGSDYLAYV IAIEELSRVC ASTGVTLSAH TSLAGWPIFK FGTEEQKQTF LRPMAEGKKI 120
  121 GAYGLTEPGS GSDAGGMKTI AKRDGDHYVL NGSKIFITNG GIADIYVVFA LTDPESKQRG 180
  181 TSAFIVESDT PGFSVGKKES KLGIRSSPTT EIMFEDCRIP VENLLGEEGQ GFKIAMQTLD 240
  241 GGRNGIAAQA VGIAQGALDA SVAYARERYQ FGKPIAAQQG IGFKLADMAT DVEAARLLTY 300
  301 QAAWLESEGL PYGKESAMSK VFAGDAAMKV TTEAVQVFGG YGYTKDYPVE RYMRDAKITQ 360
  361 IYEGTQEIQR LVISRMLTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	119.0
Match:	1jqiA
Description:	Butyryl-CoA dehydrogenase, C-domain; Butyryl-CoA dehydrogenase, NM domains
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits