YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265353, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	194 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265353, gi|....

Description	E-value	Query Range	Subject Range
gi\|228917939, gi... - gi\|228917939\|ref\|ZP_04081475.1\| Thymidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC... KITH_BACC0 - Thymidine kinase OS=Bacillus cereus (strain AH820) GN=tdk PE=3 SV=1 gi\|228658625, gi... - gi\|229124834\|ref\|ZP_04254012.1\| Thymidine kinase [Bacillus cereus 95/8201], gi\|228658625\|gb\|EEL14287... gi\|228949051, gi... - gi\|228949051\|ref\|ZP_04111323.1\| Thymidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1... gi\|47570472, gi\|... - gi\|47570472\|ref\|ZP_00241105.1\| thymidine kinase [Bacillus cereus G9241], gi\|47552868\|gb\|EAL11286.1\| ...	4.0E-80	[1..194]	[1..194]
gi\|21397804, gi\|... - gi\|65317306\|ref\|ZP_00390265.1\| COG1435: Thymidine kinase [Bacillus anthracis str. A2012], ref\|NP_653...	1.0E-79	[1..194]	[1..194]
KITH_BACCN - Thymidine kinase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=td...	2.0E-79	[1..194]	[1..194]
gi\|229082545, gi... - gi\|229082545\|ref\|ZP_04215008.1\| Thymidine kinase [Bacillus cereus Rock4-2], gi\|228700977\|gb\|EEL53500... KITH_BACCR - Thymidine kinase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373... gi\|229112744, gi... - gi\|229112744\|ref\|ZP_04242277.1\| Thymidine kinase [Bacillus cereus Rock1-15], gi\|228670725\|gb\|EEL2603... gi\|87312647 - gi\|87312647\|gb\|ABD37689.1\| thymidine kinase [Bacillus cereus] gi\|228722378, gi... - gi\|229051001\|ref\|ZP_04194550.1\| Thymidine kinase [Bacillus cereus AH676], gi\|228722378\|gb\|EEL73774.1... gi\|229072797, gi... - gi\|229072797\|ref\|ZP_04205996.1\| Thymidine kinase [Bacillus cereus F65185], gi\|228710288\|gb\|EEL62263.... gi\|228630098, gi... - gi\|229153494\|ref\|ZP_04281672.1\| Thymidine kinase [Bacillus cereus m1550], gi\|228630098\|gb\|EEK86749.1... gi\|228601946, gi... - gi\|229181578\|ref\|ZP_04308904.1\| Thymidine kinase [Bacillus cereus 172560W], gi\|228601946\|gb\|EEK59441... gi\|229130580, gi... - gi\|229130580\|ref\|ZP_04259536.1\| Thymidine kinase [Bacillus cereus BDRD-Cer4], gi\|228652919\|gb\|EEL088... gi\|229147871, gi... - gi\|229147871\|ref\|ZP_04276212.1\| Thymidine kinase [Bacillus cereus BDRD-ST24], gi\|228635521\|gb\|EEK920... gi\|228589887, gi... - gi\|229193582\|ref\|ZP_04320526.1\| Thymidine kinase [Bacillus cereus ATCC 10876], gi\|228589887\|gb\|EEK47... gi\|206970185, gi... - gi\|206970185\|ref\|ZP_03231138.1\| thymidine kinase [Bacillus cereus AH1134], gi\|206734762\|gb\|EDZ51931.... gi\|228835556, gi... - gi\|228924066\|ref\|ZP_04087342.1\| Thymidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC ... gi\|228798076, gi... - gi\|228961594\|ref\|ZP_04123203.1\| Thymidine kinase [Bacillus thuringiensis serovar pakistani str. T130...	2.0E-79	[1..194]	[1..195]
KITH_BACHK - Thymidine kinase OS=Bacillus thuringiensis subsp. konkukian GN=tdk PE=3 SV=1 KITH_BACC7 - Thymidine kinase OS=Bacillus cereus (strain AH187) GN=tdk PE=3 SV=1 gi\|228584032, gi... - gi\|229199456\|ref\|ZP_04326119.1\| Thymidine kinase [Bacillus cereus m1293], gi\|228584032\|gb\|EEK42187.1... gi\|228641362, gi... - gi\|229142073\|ref\|ZP_04270598.1\| Thymidine kinase [Bacillus cereus BDRD-ST26], gi\|228641362\|gb\|EEK976... KITH_BACAH - Thymidine kinase OS=Bacillus thuringiensis (strain Al Hakam) GN=tdk PE=3 SV=1 KITH_BACCQ - Thymidine kinase OS=Bacillus cereus (strain Q1) GN=tdk PE=3 SV=1 KITH_BACHK - Thymidine kinase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=tdk PE=3 SV=1	1.0E-78	[1..194]	[1..195]
KITH_BACCZ - Thymidine kinase OS=Bacillus cereus (strain ZK / E33L) GN=tdk PE=3 SV=1 gi\|228930338, gi... - gi\|228930338\|ref\|ZP_04093342.1\| Thymidine kinase [Bacillus thuringiensis serovar pondicheriensis BGS... gi\|228823050, gi... - gi\|228936615\|ref\|ZP_04099409.1\| Thymidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC...	2.0E-78	[1..194]	[1..195]
gi\|221320906 - gi\|221320906\|ref\|ZP_03602200.1\| thymidine kinase [Bacillus subtilis subsp. subtilis str. JH642] gi\|221325190 - gi\|221325190\|ref\|ZP_03606484.1\| thymidine kinase [Bacillus subtilis subsp. subtilis str. SMY] KITH_BACSU - Thymidine kinase OS=Bacillus subtilis (strain 168) GN=tdk PE=3 SV=2 gi\|221315995 - gi\|221315995\|ref\|ZP_03597800.1\| thymidine kinase [Bacillus subtilis subsp. subtilis str. NCIB 3610] KITH_BACSU - Thymidine kinase OS=Bacillus subtilis GN=tdk PE=3 SV=2	2.0E-78	[1..194]	[1..194]
KITH_BACC1 - Thymidine kinase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=tdk PE=3 SV=1	2.0E-77	[1..194]	[1..195]
KITH_GEOKA - Thymidine kinase OS=Geobacillus kaustophilus GN=tdk PE=3 SV=1 KITH_GEOKA - Thymidine kinase OS=Geobacillus kaustophilus (strain HTA426) GN=tdk PE=3 SV=1	3.0E-77	[1..194]	[1..194]
KITH_CLOTE - Thymidine kinase OS=Clostridium tetani GN=tdk PE=3 SV=2 KITH_CLOTE - Thymidine kinase OS=Clostridium tetani (strain Massachusetts / E88) GN=tdk PE=3 SV=2	7.0E-77	[1..192]	[1..192]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLINQNGWI EVICGSMFSG KSEELIRRVR RTQFAKQHAI VFKPCIDNRY SEEDVVSHNG  60
   61 LKVKAVPVSA SKDIFKHITE EMDVIAIDEV QFFDGDIVEV VQVLANRGYR VIVAGLDQDF 120
  121 RGLPFGQVPQ LMAIAEHVTK LQAVCSACGS PASRTQRLID GEPAAFDDPI ILVGASESYE 180
  181 PRCRHCHAVP TKQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.69897
Match:	2j9rA
Description:	No description for 2j9rA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits