YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259967, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	303 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259967, gi|....

Description	E-value	Query Range	Subject Range
gi\|47569370, gi\|... - gi\|47569370\|ref\|ZP_00240053.1\| transcriptional regulator [Bacillus cereus G9241], gi\|47553958\|gb\|EAL...	0.0	[1..303]	[1..303]
LYAT_BACCZ - Transcriptional regulator LytR OS=Bacillus cereus (strain ZK / E33L) GN=lytR PE=3 SV=1	0.0	[1..303]	[1..303]
gi\|42740360, gi\|... - gi\|42784428\|ref\|NP_981675.1\| membrane-bound transcriptional regulator LytR [Bacillus cereus ATCC 109...	0.0	[1..303]	[1..302]
gi\|65317234, gi\|... - gi\|65317234\|ref\|ZP_00390193.1\| COG1316: Transcriptional regulator [Bacillus anthracis str. A2012], r...	1.0E-99	[1..303]	[1..303]
LYAT_BACWK - Transcriptional regulator LytR OS=Bacillus weihenstephanensis (strain KBAB4) GN=lytR PE=3 SV=1	5.0E-94	[1..303]	[1..304]
gi\|56381701, gi\|... - gi\|56421859\|ref\|YP_149177.1\| membrane-bound transcriptional regulator LytR [Geobacillus kaustophilus...	5.0E-93	[2..302]	[9..308]
gi\|229130513, gi... - gi\|229130513\|ref\|ZP_04259469.1\| Membrane-bound protein lytR [Bacillus cereus BDRD-Cer4], gi\|22865285... LYAT_BACCR - Transcriptional regulator LytR OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 1530...	2.0E-91	[1..303]	[1..304]
gi\|49332802, gi\|... - gi\|49481246\|ref\|YP_039256.1\| membrane-bound transcriptional regulator LytR [Bacillus thuringiensis s...	3.0E-91	[1..303]	[1..304]
gi\|152977464, gi... - gi\|89202849\|ref\|ZP_01181555.1\| Cell envelope-related transcriptional attenuator [Bacillus cereus sub...	9.0E-90	[1..303]	[1..302]
gi\|89095940, gi\|... - gi\|89095940\|ref\|ZP_01168834.1\| membrane-bound transcriptional regulator LytR [Bacillus sp. NRRL B-14...	1.0E-86	[23..301]	[30..308]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKILFWVL GILGVLIIGG GIYAYNVYSS VSNTLKEVHQ PLKRDQNNSN VGEKVSKSEP  60
   61 VSILLLGADE RGEDKGRSDS LMVITLNPKN NSMKTVSIPR DTYTEIVGKG KSDKINHAYA 120
  121 FGGVDMSVAT VENFLNVPIN YYIEVNMEGF KDIVDAVGGV DVKNDLEFTQ DGHHFAKGNI 180
  181 HLTGDQALAF TRMRKQDPRG DFGRQMRQRQ VMQGVIK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.30103
Match:	PF03816.5
Description:	No description for PF03816.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [218-303]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGASFSSLTG YGDVLSAIQK NVKTNLTQDQ MFDMQKNYKD CLKNSEDIQI PGDGHKAADG  60
   61 IWYYYVPDAA KQDLTNKLRT HLEVTK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits