YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259966, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	330 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259966, gi|....

Description	E-value	Query Range	Subject Range
gi\|48824883 - ref\|ZP_00286208.1\| COG1087: UDP-glucose 4-epimerase [Enterococcus faecium] gi\|69246798, gi\|... - gi\|69246798\|ref\|ZP_00604127.1\| UDP-glucose 4-epimerase [Enterococcus faecium DO], gi\|68195089\|gb\|EAN...	1.0E-83	[2..330]	[1..329]
gi\|16415157, gi\|... - pir\|\|AG1759 UDP-glucose 4-epimerase [imported] - Listeria innocua (strain Clip11262), gi\|16415157\|e... gi\|16801682 - gi\|16801682\|ref\|NP_471950.1\| UDP-glucose 4-epimerase [Listeria innocua Clip11262]	1.0E-83	[1..328]	[1..328]
gi\|56420684, gi\|... - gi\|56420684\|ref\|YP_148002.1\| UDP-glucose 4-epimerase [Geobacillus kaustophilus HTA426], gi\|56380526\|...	4.0E-83	[4..329]	[2..326]
GALE_BACHD - UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1 GALE_BACHD - UDP-glucose 4-epimerase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 91...	3.0E-82	[2..328]	[1..326]
gi\|52082327, gi\|... - gi\|52787718\|ref\|YP_093547.1\| hypothetical protein BLi04041 [Bacillus licheniformis ATCC 14580], gi\|5...	2.0E-81	[2..329]	[1..328]
gi\|104774538, gi... - gi\|104774538\|ref\|YP_619518.1\| UDP-glucose 4-epimerase [Lactobacillus delbrueckii subsp. bulgaricus A... gi\|116514658, gi... - gi\|62515269\|ref\|ZP_00386708.1\| COG1087: UDP-glucose 4-epimerase [Lactobacillus delbrueckii subsp. bu...	2.0E-81	[2..330]	[1..329]
gi\|89155423, gi\|... - gi\|89206656\|ref\|ZP_01185211.1\| UDP-glucose 4-epimerase [Bacillus weihenstephanensis KBAB4], gi\|89155...	2.0E-81	[1..330]	[1..330]
gi\|116104363, gi... - gi\|62512707\|ref\|ZP_00384320.1\| COG1087: UDP-glucose 4-epimerase [Lactobacillus casei ATCC 334], gi\|1...	6.0E-81	[2..328]	[1..327]
gi\|133734460, gi... - gi\|254932282\|ref\|ZP_05265641.1\| UDP-glucose 4-epimerase [Listeria monocytogenes HPB2262], gi\|1532040... gi\|226225025, gi... - gi\|226225025\|ref\|YP_002759132.1\| UDP-glucose 4-epimerase [Listeria monocytogenes Clip81459], gi\|2258... gi\|46881921, gi\|... - gi\|46908649\|ref\|YP_015038.1\| UDP-glucose 4-epimerase [Listeria monocytogenes str. 4b F2365], gi\|4688... gi\|47092763, gi\|... - gi\|47092763\|ref\|ZP_00230548.1\| UDP-glucose 4-epimerase [Listeria monocytogenes str. 4b H7858], gi\|47...	6.0E-81	[2..328]	[1..327]

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Predicted Domain #1

Region A:
Residues: [1-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSILICGGA GYIGSHAVKK LVDEGLSVVV VDNLQTGHED AITEGAKFYN GDLRDKAFLR  60
   61 DVFTQENIEA VMHFAADSLV GVSMEKPLQY YNNNVYGALC LLEVMDEFKV DKFIFSSTAA 120
  121 TYGEVDVDLI TEETMTNPTN TYGETKLAIE KMLHWYSQAS NLRYKIFRYF NVAGATPNGI 180
  181 IGEDHRPETH LIPLVLQVAL GQREKIMMFG DDYNTPDGTC IRDYIHVEDL VAAHFLGLKD 240
  241 LQNGGESDFY NLGNGNGFSV KEIVDAVREV TNHEIPAEVA PRRAGDPARL VASSQKAKEK 300
  301 LGWDPRYVNV KTIIEHAWNW HQKQPNGYEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	82.0
Match:	2c20A
Description:	No description for 2c20A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits