YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265272, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	918 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265272, gi|....

Description	E-value	Query Range	Subject Range
gi\|42784409, gi\|... - gi\|42784409\|ref\|NP_981656.1\| helicase, putative [Bacillus cereus ATCC 10987], gi\|42740341\|gb\|AAS4426...	0.0	[1..918]	[1..918]
gi\|51973788, gi\|... - gi\|52140319\|ref\|YP_086511.1\| SNF2 family helicase [Bacillus cereus E33L], gi\|51973788\|gb\|AAU15338.1\|...	0.0	[1..918]	[1..918]
gi\|47553593, gi\|... - gi\|47569742\|ref\|ZP_00240415.1\| helicase, SNF2/RAD54 family [Bacillus cereus G9241], gi\|47553593\|gb\|E...	0.0	[1..918]	[1..918]
gi\|49332779, gi\|... - gi\|49481223\|ref\|YP_039235.1\| SNF2 family helicase [Bacillus thuringiensis serovar konkukian str. 97-...	0.0	[1..918]	[1..918]
gi\|29898838, gi\|... - gi\|30023277\|ref\|NP_834908.1\| SWF/SNF family helicase [Bacillus cereus ATCC 14579], gi\|29898838\|gb\|AA...	0.0	[1..918]	[1..918]
gi\|89206639, gi\|... - gi\|89206639\|ref\|ZP_01185194.1\| SNF2-related:Helicase, C-terminal [Bacillus weihenstephanensis KBAB4]...	0.0	[1..918]	[1..918]
gi\|152026197, gi... - gi\|89202867\|ref\|ZP_01181573.1\| SNF2-related:Helicase, C-terminal [Bacillus cereus subsp. cytotoxis N...	0.0	[1..918]	[1..918]
YWQA_BACSU - Uncharacterized ATP-dependent helicase ywqA OS=Bacillus subtilis GN=ywqA PE=3 SV=2 gi\|221325110 - gi\|221325110\|ref\|ZP_03606404.1\| hypothetical protein BsubsS_19646 [Bacillus subtilis subsp. subtilis... YWQA_BACSU - Uncharacterized ATP-dependent helicase YwqA OS=Bacillus subtilis (strain 168) GN=ywqA PE=3 SV=2 gi\|221315911 - gi\|221315911\|ref\|ZP_03597716.1\| hypothetical protein BsubsN3_19532 [Bacillus subtilis subsp. subtili... gi\|221320824 - gi\|221320824\|ref\|ZP_03602118.1\| hypothetical protein BsubsJ_19485 [Bacillus subtilis subsp. subtilis...	0.0	[1..918]	[1..917]
gi\|74493284, gi\|... - gi\|75759221\|ref\|ZP_00739322.1\| SWF/SNF family helicase [Bacillus thuringiensis serovar israelensis A...	0.0	[1..814]	[1..814]
gi\|1763712\|emb\|C... - ywqA [Bacillus subtilis] gi\|1763712 - gi\|1763712\|emb\|CAB05939.1\| ywqA [Bacillus subtilis]	0.0	[55..918]	[1..862]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINQTEVTIR LQHVSHGWFL WGEDDSGTPL SVTSWKRNAF TWHSTSFYGT FLKEATFEGK  60
   61 QGVMLTNAQA FEYIANQPMN SFARIQMNGP ITALTKDANE LWDAFTSGSF VPDMEHWPKQ 120
  121 PSWKVQHTPI EDDTLASLFS SAVNESILQD NRSNDGWEDA KRLYEHYDFT KRQLDAALHE 180
  181 EDWLRKIGYI EDDLPFTIGL RLQE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [205-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQEEFEMWKL ETIITPKRGA HRIYVYESID YLPKRWHDYE ERILETQEGF SKLVPWLKDG  60
   61 DTFRSELFET EAWNFLTEAS NELLAAGITI LL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [297-449]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSWWQNLKAT KPKLRVQLKQ NATQTQSFFG MNTLVNFDWR ISTNGIDLSE SEFFELVEQN  60
   61 KRLFNINGQW MRLDPAFIEE VRKLMNRADK YGLEMKDVLQ QHLSNTAETE IVEEDSPFND 120
  121 IEIELDGYYE ELFQKLLHIG DIPKVDVPSS LHA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [450-918]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLRPYQQHGI EWLLYLRKLG FGALLADDMG LGKSIQTITY LLYIKENNLQ TGPALIVAPT  60
   61 SVLGNWQKEF ERFAPNLRVQ LHYGSNRAKG ESFKDFLQSA DVVLTSYALA QLDEEELSTL 120
  121 CWDAVILDEA QNIKNPHTKQ SKAVRNLQAN HKIALTGTPM ENRLAELWSI FDFINHGYLG 180
  181 SLGQFQRRFV SPIEKDRDEG KIQQVQRFIS PFLLRRTKKD QTVALNLPDK QEQKAYCPLT 240
  241 GEQASLYEQL VQDTLQNVEG LSGIERRGFI LLMLNKLKQI CNHPALYLKE TEPKDIIERS 300
  301 MKTSTLMELI ENIKDQNESC LIFTQYIGMG NMLKNVLEEH FGQRVLFLNG SVPKKERDKM 360
  361 IEQFQNGTYD IFILSLKAGG TGLNLTAANH VIHYDRWWNP AVENQATDRA YRIGQKRFVH 420
  421 VHKLITTGTL EEKIDEMLER KQSLNNAVIT SDSWMTELST DELKELLGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	1z63A
Description:	Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits