YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259943, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	505 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259943, gi|....

Description	E-value	Query Range	Subject Range
gi\|26990662, gi\|... - gi\|26990662\|ref\|NP_746087.1\| choline/carnitine/betaine transporter family protein [Pseudomonas putid... tr\|E4RG06\|E4RG06... - Choline/carnitine/betaine transporter family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIR...	0.0	[6..502]	[14..502]
gi\|194554807, gi... - gi\|84324003\|ref\|ZP_00972068.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ...	0.0	[6..502]	[14..502]
gi\|218894394, gi... - gi\|218894394\|ref\|YP_002443264.1\| putative choline transporter [Pseudomonas aeruginosa LESB58], gi\|21... gi\|194548998, gi... - gi\|84317840\|ref\|ZP_00966275.1\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|11351182 - pir\|\|G82985 probable choline transporter PA5291 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|53726738, gi\|... - gi\|53726738\|ref\|ZP_00141772.2\| COG1292: Choline-glycine betaine transporter [Pseudomonas aeruginosa ... gi\|107104392 - gi\|107104392\|ref\|ZP_01368310.1\| hypothetical protein PaerPA_01005468 [Pseudomonas aeruginosa PACS2] gi\|15600484, gi\|... - gi\|9951605\|gb\|AAG08676.1\|AE004941_9 probable choline transporter [Pseudomonas aeruginosa PAO1], gi\|1...	0.0	[6..502]	[14..502]
gi\|218538100, gi... - gi\|218906415\|ref\|YP_002454249.1\| glycine betaine transporter [Bacillus cereus AH820], gi\|218538100\|g... gi\|195991080, gi... - gi\|196036288\|ref\|ZP_03103686.1\| glycine betaine transporter [Bacillus cereus W], gi\|195991080\|gb\|EDX... gi\|49332778, gi\|... - gi\|49481222\|ref\|YP_039228.1\| glycine betaine transporter [Bacillus thuringiensis serovar konkukian s... gi\|51973795, gi\|... - gi\|52140326\|ref\|YP_086504.1\| glycine betaine transporter [Bacillus cereus E33L], gi\|51973795\|gb\|AAU1... gi\|225787484, gi... - gi\|225867209\|ref\|YP_002752587.1\| glycine betaine transporter [Bacillus cereus 03BB102], gi\|225787484...	0.0	[1..505]	[1..505]
gi\|47569734, gi\|... - gi\|47569734\|ref\|ZP_00240407.1\| glycine betaine transporter opuD [Bacillus cereus G9241], gi\|47553585...	0.0	[1..505]	[1..505]
gi\|1524397\|gb\|AA... - glycine betaine transporter OpuD OPUD_BACSU - Glycine betaine transporter OpuD OS=Bacillus subtilis (strain 168) GN=opuD PE=1 SV=1 OPUD_BACSU - Glycine betaine transporter OpuD OS=Bacillus subtilis GN=opuD PE=3 SV=1	0.0	[1..504]	[2..496]
gi\|228791324, gi... - gi\|228968358\|ref\|ZP_04129353.1\| Glycine betaine transporter [Bacillus thuringiensis serovar sotto st... gi\|228903713, gi... - gi\|228903713\|ref\|ZP_04067833.1\| Glycine betaine transporter [Bacillus thuringiensis IBL 4222], gi\|22... gi\|75759214, gi\|... - gi\|75759214\|ref\|ZP_00739315.1\| Glycine betaine transporter [Bacillus thuringiensis serovar israelens...	0.0	[1..504]	[14..517]
gi\|42740335, gi\|... - gi\|42784403\|ref\|NP_981650.1\| glycine betaine transporter [Bacillus cereus ATCC 10987], gi\|42740335\|g...	0.0	[1..505]	[1..505]
gi\|89155399, gi\|... - gi\|89206632\|ref\|ZP_01185187.1\| BCCT transporter [Bacillus weihenstephanensis KBAB4], gi\|89155399\|gb\|...	0.0	[1..504]	[1..504]
gi\|152986479, gi... - gi\|94417776\|ref\|ZP_01297593.1\| hypothetical protein PaerP_01000558 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[6..502]	[14..502]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKLTKTFIV SLTLCIAFTL WGIIPESIIG KGSLGNVTTA IQTALVSKFG WSYIISVSII  60
   61 LGVSIFLIVS KYGSIRLGKD DDEP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYSYMTWFAM LFSAGMGIGL VFWGVAEPLN HLYAPPFGES ATEESARLAL RFSFFHWGLH  60
   61 PWGLYAFVAL CIAYFTFRKG KASTISATVG PLFKGGDHGR IAHLFDVLAV FATVFGVATS 120
  121 LGLGAKQIAG GVSYLTSIPN SLTTQLVIIA IVTVLFMLSA QTGLDKGIKY LSNTNIILAF 180
  181 ALMIIVLFVG PTNFIMNYFT STIGAYIQEL PSMSFRLSPL DEGGNQWIQS WTIFYWAWW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [324-505]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAWSPFVGTF IARVSRGRTI REFVIGVLLV PTVIGALWFS VFGGTGIHME LFGDAHIFEK  60
   61 VKEMGTEVGL FAMFDQMGSF GSALSVLAIL LISTFFITSA DSATFVLGML TTHGSLNPPN 120
  121 RIKMIWGIVL AALASILLYV GGLEALQTAA IIAAFPFVFV IFFMMAALFK ELQKEGRMKR 180
  181 HK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits