YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259914, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259914, gi|....

Description	E-value	Query Range	Subject Range
SPEH_CLOTE - S-adenosylmethionine decarboxylase proenzyme OS=Clostridium tetani (strain Massachusetts / E88) GN=s... SPEH_CLOTE - S-adenosylmethionine decarboxylase proenzyme OS=Clostridium tetani GN=speH PE=3 SV=1	181.0	[0..3]	[118..1]
SPEH_CLOTH - S-adenosylmethionine decarboxylase proenzyme OS=Clostridium thermocellum (strain ATCC 27405 / DSM 12...	181.0	[0..3]	[118..1]
SPEH_CALS8 - S-adenosylmethionine decarboxylase proenzyme OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43... SPEH_CALBD - S-adenosylmethionine decarboxylase proenzyme OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / ...	178.0	[0..3]	[118..1]
gi\|89894982, gi\|... - gi\|89894982\|ref\|YP_518469.1\| S-adenosylmethionine decarboxylase proenzyme [Desulfitobacterium hafnie... gi\|68167209, gi\|... - gi\|68208905\|ref\|ZP_00560987.1\| Adenosylmethionine decarboxylase [Desulfitobacterium hafniense DCB-2]...	177.0	[0..4]	[119..3]
gi\|88945067, gi\|... - gi\|88945067\|ref\|ZP_01148287.1\| Adenosylmethionine decarboxylase [Desulfotomaculum reducens MI-1], gi...	176.0	[0..3]	[118..1]
SPH1_BACHD, SPEH... - (Q9K859) S-adenosylmethionine decarboxylase proenzyme 1 (EC 4.1.1.50) (AdoMetDC 1) (SamDC 1) [Contai... SPEH2_BACHD - S-adenosylmethionine decarboxylase proenzyme 2 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 181...	174.0	[0..3]	[119..1]
SPEH_CARHZ - S-adenosylmethionine decarboxylase proenzyme OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-1...	174.0	[0..3]	[117..1]
gi\|2128233 - gi\|2128233\|pir\|\|D64339 hypothetical protein MJ0315 - Methanococcus jannaschii gi\|1591035, gi\|1... - gi\|1591035\|gb\|AAB98301.1\| conserved hypothetical protein [Methanocaldococcus jannaschii DSM 2661], g...	173.0	[0..3]	[118..13]
SPEH_THETN - S-adenosylmethionine decarboxylase proenzyme OS=Thermoanaerobacter tengcongensis GN=speH PE=3 SV=1 SPEH_CALS4 - S-adenosylmethionine decarboxylase proenzyme OS=Caldanaerobacter subterraneus subsp. tengcongensis (...	173.0	[0..3]	[118..1]
gi\|52081404, gi\|... - gi\|52081404\|ref\|YP_080195.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus licheniformis AT...	173.0	[0..3]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYSTFGKHI IVDLWGVDFS LLDDMYFLEH HLIHAADLSG AHVLNVSTKE FDPHGVTVLV  60
   61 LLSESHLSIH TYPEQNFAAI DCYTCGTTVE PQIAIDYIVS ILKPNEMHIR RLIRGIGEIV 120
  121 NTD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	1vr7A
Description:	Crystal structure of S-adenosylmethionine decarboxylase proenzyme (TM0655) from THERMOTOGA MARITIMA at 1.2 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits