YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21397671, gi\|...
Organism:	Bacillus anthracis str. A2012
Length:	435 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21397671, gi|....

Description	E-value	Query Range	Subject Range
gi\|89150747, gi\|... - gi\|89201160\|ref\|ZP_01179906.1\| PTS lactose/cellobiose IIC component:PTS system cellobiose-specific I...	2.0E-63	[1..435]	[1..435]
PTJC_BACSU, PTCC... - Lichenan permease IIC component OS=Bacillus subtilis GN=licC PE=2 SV=1, (P46317) PTS system, lichena... gi\|221321062 - gi\|221321062\|ref\|ZP_03602356.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIC compone... gi\|221316151 - gi\|221316151\|ref\|ZP_03597956.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIC compone... gi\|221325347 - gi\|221325347\|ref\|ZP_03606641.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIC compone... PTJC_BACSU - Lichenan permease IIC component OS=Bacillus subtilis (strain 168) GN=licC PE=2 SV=1	2.0E-61	[1..426]	[1..437]
gi\|29898804, gi\|... - gi\|30023244\|ref\|NP_834875.1\| PTS system, lichenan oligosaccharide-specific IIC component [Bacillus c...	3.0E-61	[1..435]	[1..435]
gi\|52140357, gi\|... - gi\|52140357\|ref\|YP_086473.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus E33L], g...	3.0E-61	[1..435]	[1..435]
gi\|47569706, gi\|... - gi\|47570012\|ref\|ZP_00240674.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus G9241]...	3.0E-61	[1..435]	[1..435]
gi\|49481181, gi\|... - gi\|49481181\|ref\|YP_039197.1\| PTS system, cellobiose-specific IIC component [Bacillus thuringiensis s...	6.0E-61	[1..431]	[1..431]
gi\|163865090, gi... - gi\|89205074\|ref\|ZP_01183647.1\| PTS lactose/cellobiose IIC component:PTS system cellobiose-specific I...	6.0E-61	[1..435]	[1..435]
gi\|52005586, gi\|... - gi\|52787765\|ref\|YP_093594.1\| LicC [Bacillus licheniformis ATCC 14580], gi\|52350267\|gb\|AAU42901.1\| Li...	6.0E-61	[1..432]	[1..443]
gi\|42784365, gi\|... - gi\|42784365\|ref\|NP_981612.1\| PTS system, cellobiose-specific IIC component [Bacillus cereus ATCC 109...	1.0E-60	[1..433]	[1..433]
PTEC_GEOSE - Cellobiose permease IIC component OS=Geobacillus stearothermophilus GN=celB PE=3 SV=1	1.0E-60	[1..425]	[1..438]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKFIAFMEK YIVPVAGKIG SQRHLAAIRD GFIAVMPLIL VGALASLING FPSEAFQDFM  60
   61 KGLFGETWKQ VGGGMWTGSF AILALIIAFT TSYNLAKSYG VDGLSAGIIS FGALIILTPT 120
  121 TPKEGG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [127-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNLAWTGAQG LFVAIIVALL VTEVFRFFVQ RNITFKMPDG VPPAVLRSFA AIVPAFVILT  60
   61 VVAGIQLAVK LAGTSVHEFI FNTIQSPLQS LAGTLPSAIV IVLLVHLLWF FGLHGPNIVG 120
  121 GIIEPLYLPA LEKNMKLFQG GTSAFDVPNI VTKPFFDTFV YLGGSGATLA FLVVVLLVAK 180
  181 SAQLRGVSRL SIGPGAFNIN EP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [329-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VIFGTPIILN PVLFLPFIIT PIVLVITSYT AISIGWVPKT VAMIPWATPP IISGYLVTGG  60
   61 HLSGAILQLF NFVIAMVIYY PFVVLCDRSV VRTEKAAAQG NNNSVPM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits