YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259900, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259900, gi|....

Description	E-value	Query Range	Subject Range
gi\|42784351, gi\|... - gi\|42784351\|ref\|NP_981598.1\| LytR family transcription antiterminator [Bacillus cereus ATCC 10987], ...	0.0	[1..375]	[1..377]
gi\|49481154, gi\|... - gi\|49481154\|ref\|YP_039186.1\| LytR family transcriptional regulator [Bacillus thuringiensis serovar k... gi\|51973836, gi\|... - gi\|52140367\|ref\|YP_086462.1\| LytR family transcriptional regulator [Bacillus cereus E33L], gi\|519738... gi\|228658799, gi... - gi\|229124704\|ref\|ZP_04253885.1\| Transcriptional regulator, LytR [Bacillus cereus 95/8201], gi\|228658... gi\|229094292, gi... - gi\|229094292\|ref\|ZP_04225368.1\| Transcriptional regulator, LytR [Bacillus cereus Rock3-42], gi\|22868... gi\|228930199, gi... - gi\|228930199\|ref\|ZP_04093208.1\| Transcriptional regulator, LytR [Bacillus thuringiensis serovar pond... gi\|196032906, gi... - gi\|196032906\|ref\|ZP_03100319.1\| transcription antiterminator, LytR family [Bacillus cereus W], gi\|19...	0.0	[1..375]	[1..375]
gi\|47568481, gi\|... - gi\|47569305\|ref\|ZP_00239990.1\| cell-envelope associated acid phosphatase [Bacillus cereus G9241], gi...	0.0	[1..375]	[1..377]
gi\|228652784, gi... - gi\|229130445\|ref\|ZP_04259401.1\| Transcriptional regulator, LytR [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|29898793, gi\|... - gi\|30023233\|ref\|NP_834864.1\| LytR family transcriptional regulator [Bacillus cereus ATCC 14579], gi\|... gi\|228722516, gi... - gi\|229050860\|ref\|ZP_04194412.1\| Transcriptional regulator, LytR [Bacillus cereus AH676], gi\|22872251...	0.0	[1..374]	[1..373]
gi\|65317169 - gi\|65317169\|ref\|ZP_00390128.1\| COG1316: Transcriptional regulator [Bacillus anthracis str. A2012]	0.0	[46..375]	[1..330]
gi\|89201179, gi\|... - gi\|89201179\|ref\|ZP_01179925.1\| Cell envelope-related transcriptional attenuator [Bacillus cereus sub...	0.0	[1..375]	[1..383]
gi\|163942882, gi... - gi\|89205063\|ref\|ZP_01183636.1\| Cell envelope-related transcriptional attenuator [Bacillus weihenstep...	0.0	[1..375]	[1..374]
gi\|25328875 - pir\|\|G84105 transcription regulator BH3647 [imported] - Bacillus halodurans (strain C-125) gi\|15616209, gi\|... - gi\|15616209\|ref\|NP_244514.1\| transcriptional regulator [Bacillus halodurans C-125], gi\|10176271\|dbj\|...	2.0E-88	[4..353]	[2..352]
gi\|56381701, gi\|... - gi\|56421859\|ref\|YP_149177.1\| membrane-bound transcriptional regulator LytR [Geobacillus kaustophilus...	1.0E-87	[8..324]	[1..311]

Back

Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEERYYHLQN SRIKKKRRRK FFYFLIFLFL FGSVGLYILN SYSSLMGMYS GFTREKSDLR  60
   61 TEDVEITKEP FTLLIMGIED YATDGQNGRT DSIMFATVNP K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [102-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQKISLMSIP RDSRVPIVGK NKEDKINAAH AYGGEEMAIK TVEGFLKVPV DHYLKIDFQG  60
   61 FKGIVDAVGG VTVDVPFDFW ERSDVDYYKK IEFKQGQQEL NGEEALAYVR MRKQDPNGDY 120
  121 GRAARQRQLL AAVAQKLNST STVFKIKDLT AVVGKYIKTD IPISDGLALY NK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	75.823909
Match:	PF03816.5
Description:	No description for PF03816.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [274-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSGFDPSTIQ TFKLEGEDKK IGGIYYFLPD PNGVEAVRNE IKKELGEKVS TQENTTTKTE  60
   61 SNPSSNSNSN EKAKKETNQD KTPTDPPPST NAHAEWIMRN QQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits