YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30265204, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30265204, gi|....

Description	E-value	Query Range	Subject Range
gi\|75759017, gi\|... - gi\|75759017\|ref\|ZP_00739125.1\| Trp repressor binding protein [Bacillus thuringiensis serovar israele... gi\|228903649, gi... - gi\|228903649\|ref\|ZP_04067769.1\| FMN reductase, NADPH-dependent [Bacillus thuringiensis IBL 4222], gi...	3.0E-33	[3..181]	[3..181]
gi\|49480385, gi\|... - gi\|49480385\|ref\|YP_039166.1\| NAD(P)H dehydrogenase (quinone); trp repressor-binding protein [Bacillu...	8.0E-33	[3..181]	[3..181]
gi\|52140388, gi\|... - gi\|52140388\|ref\|YP_086442.1\| NAD(P)H dehydrogenase (quinone); trp repressor-binding protein [Bacillu...	2.0E-32	[3..181]	[3..181]
gi\|229135982, gi... - gi\|229135982\|ref\|ZP_04264743.1\| FMN reductase, NADPH-dependent [Bacillus cereus BDRD-ST196], gi\|2286... gi\|163865059, gi... - gi\|89205043\|ref\|ZP_01183616.1\| NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase [Bacill...	2.0E-32	[3..181]	[3..181]
gi\|42740259, gi\|... - gi\|42784328\|ref\|NP_981575.1\| FMN reductase, NADPH-dependent [Bacillus cereus ATCC 10987], gi\|4274025...	6.0E-32	[3..181]	[3..181]
gi\|229050836, gi... - gi\|229050836\|ref\|ZP_04194388.1\| FMN reductase, NADPH-dependent [Bacillus cereus AH676], gi\|228722492... gi\|228961403, gi... - gi\|228961403\|ref\|ZP_04123017.1\| FMN reductase, NADPH-dependent [Bacillus thuringiensis serovar pakis... gi\|218235320, gi... - gi\|218235320\|ref\|YP_002369951.1\| FMN reductase, NADPH-dependent [Bacillus cereus B4264], gi\|21816327... gi\|229153330, gi... - gi\|229153330\|ref\|ZP_04281508.1\| FMN reductase, NADPH-dependent [Bacillus cereus m1550], gi\|228629934... gi\|30023210, gi\|... - gi\|30023210\|ref\|NP_834841.1\| Trp repressor binding protein [Bacillus cereus ATCC 14579], gi\|29898770... gi\|228635713, gi... - gi\|229147700\|ref\|ZP_04276043.1\| FMN reductase, NADPH-dependent [Bacillus cereus BDRD-ST24], gi\|22863... gi\|228653119, gi... - gi\|229130420\|ref\|ZP_04259378.1\| FMN reductase, NADPH-dependent [Bacillus cereus BDRD-Cer4], gi\|22865...	7.0E-32	[3..181]	[3..181]
YA83_METJA, Y108... - (Q58483) Hypothetical protein MJ1083, Uncharacterized protein MJ1083 - Methanococcus jannaschii, Iro... ISF2_METJA - Iron-sulfur flavoprotein MJ1083 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	1.0E-31	[1..180]	[3..189]
gi\|47569283, gi\|... - gi\|47569283\|ref\|ZP_00239968.1\| Trp repressor binding protein [Bacillus cereus G9241], gi\|47568459\|re...	2.0E-31	[3..178]	[3..178]
gi\|48425364, gi\|... - gi\|48425366\|pdb\|1RLI\|D Chain D, The Structure Of Trp Repressor Binding Protein From Bacillus Subtili...	4.0E-31	[1..174]	[6..180]
YWQN_BACSU - Putative NAD(P)H-dependent FMN-containing oxidoreductase ywqN OS=Bacillus subtilis GN=ywqN PE=1 SV=1 YWQN_BACSU - Putative NAD(P)H-dependent FMN-containing oxidoreductase YwqN OS=Bacillus subtilis (strain 168) GN=y... gi\|221325096 - gi\|221325096\|ref\|ZP_03606390.1\| hypothetical protein BsubsS_19576 [Bacillus subtilis subsp. subtilis... gi\|221320810 - gi\|221320810\|ref\|ZP_03602104.1\| hypothetical protein BsubsJ_19415 [Bacillus subtilis subsp. subtilis... gi\|221315897 - gi\|221315897\|ref\|ZP_03597702.1\| hypothetical protein BsubsN3_19462 [Bacillus subtilis subsp. subtili...	4.0E-31	[1..174]	[3..177]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVIHGSSRQ NGNTEALTHM MIEGIETEQI YLRDHTIHPI TDQRHNAEGF QPVDDDYEQL  60
   61 MKRMLEHDTI IFATPLYWYG MSGHMKNFFD RWSQSLRDTS LHFKEKMKGK KMYVVIVGGD 120
  121 NPKLKALPLI AQFQYIFDFI GSSFEGYIIG DANGLDEIQN DAEALAKAQI YNKEFKNHKQ 180
  181 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1rliA
Description:	The Structure of Trp Repressor Binding Protein from Bacillus subtilis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits